RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TRIM48Q8IWZ4 208 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 AGBL5Q8NDL9 886 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 CCDC74BQ96LY2 380 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 ASB8Q9H765 288 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 UGT1A7Q9HAW7 530 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 UGT1A10Q9HAW8 530 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 UGT1A8Q9HAW9 530 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 LZTFL1Q9NQ48 299 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 PDP2Q9P2J9 529 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 FKBPLQ9UIM3 349 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 DNAJC16Q9Y2G8 782 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 ZKSCAN5Q9Y2L8 839 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 DSPP15924 2871 aaKnown RBP20.28■□□□□ 0.84
VPS28-206ENST00000526734 PMS2P1A4D2B8 440 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 AGAP14A8MT82 685 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 VIPP01282 170 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 RALBP11234 206 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 CD82P27701 267 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 CSF2RBP32927 897 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 FDFT1P37268 417 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 PPM1FP49593 454 aaPredicted RBP20.28■□□□□ 0.84
VPS28-206ENST00000526734 TMPRSS3P57727 454 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 CCZ1BP86790 482 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 CCZ1P86791 482 aaPredicted RBP20.28■□□□□ 0.84
VPS28-206ENST00000526734 C16orf72Q14CZ0 275 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 GPR33Q49SQ1 333 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 ZNF574Q6ZN55 896 aaPredicted RBP20.28■□□□□ 0.84
VPS28-206ENST00000526734 JAMLQ86YT9 394 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 RASGEF1AQ8N9B8 481 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 ATG4AQ8WYN0 398 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.28■□□□□ 0.84
VPS28-206ENST00000526734 ZNF148Q9UQR1 794 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 UNC13CQ8NB66 2214 aa20.28■□□□□ 0.84
VPS28-206ENST00000526734 ZFC3H1O60293 1989 aaKnown RBP20.28■□□□□ 0.84
VPS28-206ENST00000526734 CFAP99D6REC4 459 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 H7C0S8 307 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 GAS8O95995 478 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 SLC5A2P31639 672 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 CSTF2P33240 577 aaKnown RBP eCLIP20.27■□□□□ 0.84
VPS28-206ENST00000526734 XIAPP98170 497 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 OLIG2Q13516 323 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 LAMB3Q13751 1172 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 SPARCL1Q14515 664 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 NKAIN2Q5VXU1 208 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 SNX20Q7Z614 316 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 DCUN1D1Q96GG9 259 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 PRORYQ9H606 182 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 CRLS1Q9UJA2 301 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 SLC30A1Q9Y6M5 507 aa20.27■□□□□ 0.84
VPS28-206ENST00000526734 KLK10O43240 276 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 LDB2O43679 373 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 POP7O75817 140 aaKnown RBP20.26■□□□□ 0.83
VPS28-206ENST00000526734 HGFP14210 728 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 HOXB3P14651 431 aaPredicted RBP20.26■□□□□ 0.83
VPS28-206ENST00000526734 PTPRCAPQ14761 206 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 BCL7AQ4VC05 210 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 DRICH1Q6PGQ1 229 aaPredicted RBP20.26■□□□□ 0.83
VPS28-206ENST00000526734 TMEM220Q6QAJ8 160 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 C4orf22Q6V702 233 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 TMEM26Q6ZUK4 368 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 ZNF761Q86XN6 746 aaPredicted RBP20.26■□□□□ 0.83
VPS28-206ENST00000526734 OR13C4Q8NGS5 318 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 CXorf40BQ96DE9 158 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 NAF1Q96HR8 494 aaKnown RBP20.26■□□□□ 0.83
VPS28-206ENST00000526734 SSUH2Q9Y2M2 353 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 KCTD3Q9Y597 815 aa20.26■□□□□ 0.83
VPS28-206ENST00000526734 ZNF106Q9H2Y7 1883 aaKnown RBP20.26■□□□□ 0.83
VPS28-206ENST00000526734 GPR39O43194 453 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 IFNB1P01574 187 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 BRAFP15056 766 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 ITIH1P19827 911 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 SLC19A1P41440 591 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 CTSCP53634 463 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 CFHR1Q03591 330 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 CDH17Q12864 832 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 CCNG2Q16589 344 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 GPR155Q7Z3F1 870 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 PLXDC1Q8IUK5 500 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 NXPE1Q8N323 547 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 BEND7Q8N7W2 519 aaPredicted RBP20.25■□□□□ 0.83
VPS28-206ENST00000526734 CCDC89Q8N998 374 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 STYXQ8WUJ0 223 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 LINC00615Q96LM1 132 aaPredicted RBP20.25■□□□□ 0.83
VPS28-206ENST00000526734 FCRL3Q96P31 734 aaPredicted RBP20.25■□□□□ 0.83
VPS28-206ENST00000526734 COPS8Q99627 209 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 NLE1Q9NVX2 485 aaPredicted RBP20.25■□□□□ 0.83
VPS28-206ENST00000526734 SCHIP1Q9P0W5 487 aaPredicted RBP20.25■□□□□ 0.83
VPS28-206ENST00000526734 PAK5Q9P286 719 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 ZNF624Q9P2J8 865 aaPredicted RBP20.25■□□□□ 0.83
VPS28-206ENST00000526734 PPP2R2CQ9Y2T4 447 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 PCDHGA3Q9Y5H0 932 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 CFAP47Q6ZTR5 3102 aa20.25■□□□□ 0.83
VPS28-206ENST00000526734 MN1Q10571 1320 aaPredicted RBP20.25■□□□□ 0.83
VPS28-206ENST00000526734 ZFYVE26Q68DK2 2539 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 TEX51A0A1B0GUA7 166 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 MGAT4DA6NG13 374 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 OR2AG2A6NM03 316 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 B4E171 279 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 E7EVH7 732 aa20.24■□□□□ 0.83
VPS28-206ENST00000526734 SUN1O94901 812 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms