RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 HADHAP40939 763 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 MAGEA6P43360 314 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 DR1Q01658 176 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 HLTFQ14527 1009 aaKnown RBP eCLIP10.02□□□□□ -0.81
VPS28-204ENST00000526054 KCNJ11Q14654 390 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 POU6F1Q14863 301 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 TGIF1Q15583 401 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 PHF19Q5T6S3 580 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 OGFOD3Q6PK18 319 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 SFTPA2Q8IWL1 248 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 PELI3Q8N2H9 469 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 GPR26Q8NDV2 337 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 CCL4L1Q8NHW4 92 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 DTX3LQ8TDB6 740 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 CMKLR1Q99788 373 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 C19orf43Q9BQ61 176 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 LGR4Q9BXB1 951 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 CARS2Q9HA77 564 aaKnown RBP10.02□□□□□ -0.81
VPS28-204ENST00000526054 CASS4Q9NQ75 786 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 RRAGDQ9NQL2 400 aaPredicted RBP10.02□□□□□ -0.81
VPS28-204ENST00000526054 PIH1D1Q9NWS0 290 aaKnown RBP10.02□□□□□ -0.81
VPS28-204ENST00000526054 LRIT1Q9P2V4 623 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 CDC23Q9UJX2 597 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 NEU2Q9Y3R4 380 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 ARL5AQ9Y689 179 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 FADS2P1A8MWK0 482 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 INPP4BO15327 924 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 NVLO15381 856 aaKnown RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 BUD23O43709 281 aaKnown RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 SLC28A2O43868 658 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 ADCY8P40145 1251 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 PTGIRP43119 386 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 ZNF140P52738 457 aaPredicted RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 MAPK10P53779 464 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 TERF1P54274 439 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 MAZP56270 477 aaKnown RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 ZFP36L1Q07352 338 aaKnown RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 C2orf54Q08AI8 447 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 ILF3Q12906 894 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS28-204ENST00000526054 SRSF6Q13247 344 aaKnown RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 MSLNQ13421 630 aaPredicted RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 ITGA9Q13797 1035 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 TUBB2AQ13885 445 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 WHAMMP3Q1A5X7 153 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 LRRC8BQ6P9F7 803 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 DOK6Q6PKX4 331 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 FAM151BQ6UXP7 276 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 USP53Q70EK8 1073 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 NLRP9Q7RTR0 991 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 PCGF5Q86SE9 256 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 PHYKPLQ8IUZ5 450 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 SLITRK4Q8IW52 837 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 SPATA4Q8NEY3 305 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 PPHLN1Q8NEY8 458 aaKnown RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 OR4K2Q8NGD2 314 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 STYXQ8WUJ0 223 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 CPT1BQ92523 772 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 SGF29Q96ES7 293 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 RANBP9Q96S59 729 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 KRT12Q99456 494 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 AGAP2Q99490 1192 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 TUBB2BQ9BVA1 445 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 GSDMCQ9BYG8 508 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 FRMD8Q9BZ67 464 aaPredicted RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 XAB2Q9HCS7 855 aaKnown RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 BFARQ9NZS9 450 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 FKBPLQ9UIM3 349 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 AHCTF1Q8WYP5 2266 aa10.01□□□□□ -0.81
VPS28-204ENST00000526054 ZFC3H1O60293 1989 aaKnown RBP10.01□□□□□ -0.81
VPS28-204ENST00000526054 RHPN2P1A8MT19 583 aa10□□□□□ -0.81
VPS28-204ENST00000526054 DNALI1O14645 258 aaPredicted RBP10□□□□□ -0.81
VPS28-204ENST00000526054 NDC80O14777 642 aa10□□□□□ -0.81
VPS28-204ENST00000526054 TTI1O43156 1089 aa10□□□□□ -0.81
VPS28-204ENST00000526054 EFSO43281 561 aa10□□□□□ -0.81
VPS28-204ENST00000526054 LDB2O43679 373 aa10□□□□□ -0.81
VPS28-204ENST00000526054 TMEM63AO94886 807 aa10□□□□□ -0.81
VPS28-204ENST00000526054 SLC25A14O95258 325 aaPredicted RBP10□□□□□ -0.81
VPS28-204ENST00000526054 PRAMEF1O95521 474 aa10□□□□□ -0.81
VPS28-204ENST00000526054 ASMTLO95671 621 aa10□□□□□ -0.81
VPS28-204ENST00000526054 CPNE6O95741 557 aa10□□□□□ -0.81
VPS28-204ENST00000526054 ITGALP20701 1170 aa10□□□□□ -0.81
VPS28-204ENST00000526054 ADRA1DP25100 572 aa10□□□□□ -0.81
VPS28-204ENST00000526054 ETV5P41161 510 aa10□□□□□ -0.81
VPS28-204ENST00000526054 GRIA1P42261 906 aa10□□□□□ -0.81
VPS28-204ENST00000526054 GNPDA1P46926 289 aa10□□□□□ -0.81
VPS28-204ENST00000526054 NPY2RP49146 381 aa10□□□□□ -0.81
VPS28-204ENST00000526054 SESN2P58004 480 aaPredicted RBP10□□□□□ -0.81
VPS28-204ENST00000526054 BIRC2Q13490 618 aa10□□□□□ -0.81
VPS28-204ENST00000526054 SKIDA1Q1XH10 827 aa10□□□□□ -0.81
VPS28-204ENST00000526054 AMZ1Q400G9 498 aa10□□□□□ -0.81
VPS28-204ENST00000526054 MANEAQ5SRI9 462 aa10□□□□□ -0.81
VPS28-204ENST00000526054 SLC30A9Q6PML9 568 aa10□□□□□ -0.81
VPS28-204ENST00000526054 PRICKLE2Q7Z3G6 844 aa10□□□□□ -0.81
VPS28-204ENST00000526054 ZNF572Q7Z3I7 529 aaPredicted RBP10□□□□□ -0.81
VPS28-204ENST00000526054 TMPRSS9Q7Z410 1059 aa10□□□□□ -0.81
VPS28-204ENST00000526054 MAATS1Q7Z4T9 603 aa10□□□□□ -0.81
VPS28-204ENST00000526054 TRIM74Q86UV6 250 aa10□□□□□ -0.81
VPS28-204ENST00000526054 VASH2Q86V25 355 aa10□□□□□ -0.81
VPS28-204ENST00000526054 PPIL6Q8IXY8 311 aa10□□□□□ -0.81
VPS28-204ENST00000526054 MCUQ8NE86 351 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms