RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 EDC4Q6P2E9 1401 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 ANKRD36BQ8N2N9 1353 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 KIAA0232Q92628 1395 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 COL14A1Q05707 1796 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 ZNF804BA4D1E1 1349 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 WDR33Q9C0J8 1336 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 NWD2Q9ULI1 1742 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 RNF103-CHMP3A0A140T963 221 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 A4D1N5 150 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 CTAGE9A4FU28 777 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 DDTLA6NHG4 134 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 A8MV72 311 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 A8MZ25 164 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 NPIPB11E5RHQ5 1161 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 RNF103O00237 685 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 PPP6CO00743 305 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 TLX3O43711 291 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 CNOT3O75175 753 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 MT-CYBP00156 380 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 MYZAPP0CAP1 466 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 PCNAP12004 261 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 EDN2P20800 178 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 HOXC8P31273 242 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 PPARGP37231 505 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 GARSP41250 739 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 ACAA2P42765 397 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 PIP4K2AP48426 406 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 AMPHP49418 695 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 HSD17B4P51659 736 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 DAZAP2Q15038 168 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 PPP1R7Q15435 360 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 PLEKHO1Q53GL0 409 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 MPP7Q5T2T1 576 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 ASPHD1Q5U4P2 390 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 TPGS2Q68CL5 300 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 TMEM154Q6P9G4 183 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 C15orf52Q6ZUT6 534 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 CHST3Q7LGC8 479 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 ADGRA1Q86SQ6 560 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 ADCK1Q86TW2 530 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 ADGRF2Q8IZF7 708 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 KDM1BQ8NB78 822 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 POGLUT1Q8NBL1 392 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 KIF18AQ8NI77 898 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 RNF139Q8WU17 664 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 ATOH1Q92858 354 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 SNAPC3Q92966 411 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 MMABQ96EY8 250 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 COG3Q96JB2 828 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 ZNF333Q96JL9 665 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 WDFY2Q96P53 400 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 SCAND2PQ9GZW5 306 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 HSD3B7Q9H2F3 369 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 RWDD1Q9H446 243 aaPredicted RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 KAT14Q9H8E8 782 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 MRPL44Q9H9J2 332 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 POLR1BQ9H9Y6 1135 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 ANO10Q9NW15 660 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 DLGAP2Q9P1A6 1054 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 KLHL13Q9P2N7 655 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 CPSF3Q9UKF6 684 aaKnown RBP4.78□□□□□ -1.64
CD44-220ENST00000525688 FAM96BQ9Y3D0 163 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 JRKLQ9Y4A0 524 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 N6AMT1Q9Y5N5 214 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 RGS12O14924 1447 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 SRCAPQ6ZRS2 3230 aa4.78□□□□□ -1.64
CD44-220ENST00000525688 NRAPQ86VF7 1730 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 PLCH1Q4KWH8 1693 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 USP54Q70EL1 1684 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 A0A0G2JK05 382 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 A0A0G2JPF8 293 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 HNRNPCL3B7ZW38 293 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 HSPB6O14558 160 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SCAMP1O15126 338 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SEC14L5O43304 696 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SLC25A17O43808 307 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 PEX11AO75192 247 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 BCAS2O75934 225 aaPredicted RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 IPO7O95373 1038 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 ADCY5O95622 1261 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 FTCDO95954 541 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 TPOP07202 933 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 MMP3P08254 477 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 HNRNPCL4P0DMR1 293 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 NEFHP12036 1026 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SKILP12757 684 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 ARF4P18085 180 aaPredicted RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 SRD5A1P18405 259 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 CCNA2P20248 432 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 CD9P21926 228 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 ADSSP30520 456 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 TNFSF8P32971 234 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 CAPZA2P47755 286 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 NT5C2P49902 561 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 KCNJ10P78508 379 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 MRPS5P82675 430 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 COG7P83436 770 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 BEX3Q00994 111 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms