RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 GALNTL6Q49A17 601 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 ANKRD20A2Q5SQ80 823 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 ANKRD20A1Q5TYW2 823 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 ANKRD20A3Q5VUR7 823 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 KCTD16Q68DU8 428 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 GUSBP11Q6P575 273 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 LRRC69Q6ZNQ3 347 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 USP45Q70EL2 814 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 RD3Q7Z3Z2 195 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 TECPR1Q7Z6L1 1165 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 PQLC3Q8N755 202 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 PDCD6IPQ8WUM4 868 aaKnown RBP7.98□□□□□ -1.13
SCN1A-207ENST00000507401 HDAC11Q96DB2 347 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 NUS1Q96E22 293 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 STAMBPL1Q96FJ0 436 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 DTD2Q96FN9 168 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 ZNF317Q96PQ6 595 aaPredicted RBP7.98□□□□□ -1.13
SCN1A-207ENST00000507401 GORASP1Q9BQQ3 440 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 TLR10Q9BXR5 811 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 MAK16Q9BXY0 300 aaKnown RBP7.98□□□□□ -1.13
SCN1A-207ENST00000507401 TRIM4Q9C037 500 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 BRD8Q9H0E9 1235 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 WDR26Q9H7D7 661 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 POLR1BQ9H9Y6 1135 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 NT5MQ9NPB1 228 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 TIMMDC1Q9NPL8 285 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 PHPT1Q9NRX4 125 aaPredicted RBP7.98□□□□□ -1.13
SCN1A-207ENST00000507401 TRNAU1APQ9NX07 287 aaKnown RBP7.98□□□□□ -1.13
SCN1A-207ENST00000507401 IL1RAPL1Q9NZN1 696 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 NDUFA13Q9P0J0 144 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 PDP2Q9P2J9 529 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 APPL1Q9UKG1 709 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 DNPEPQ9ULA0 475 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 SHROOM3Q8TF72 1996 aa7.98□□□□□ -1.13
SCN1A-207ENST00000507401 ZFYVE26Q68DK2 2539 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 A0A0J9YYE9 177 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 MACROD2A1Z1Q3 448 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 RGSL1A5PLK6 1076 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 NPIPB15A6NHN6 443 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 PGRMC1O00264 195 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 NTN3O00634 580 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 MFSD11O43934 449 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 BRINP1O60477 761 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 USP12O75317 370 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 CSO75390 466 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 TRBC1P01850 177 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 CEACAM5P06731 702 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 PDHA1P08559 390 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 RPSAP08865 295 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 MYCLP1P12525 358 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 GLB1P16278 677 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 LHCGRP22888 699 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 HPDP32754 393 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 ETV3P41162 512 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 NR2C2P49116 596 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 HADHBP55084 474 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 IFI35P80217 286 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 GBE1Q04446 702 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 SRSF11Q05519 484 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 PPIDQ08752 370 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 SLC10A2Q12908 348 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 BNIP1Q12981 228 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 UBAP2LQ14157 1087 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 HLTFQ14527 1009 aaKnown RBP eCLIP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 KPNB1Q14974 876 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 TAF11Q15544 211 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 COL28A1Q2UY09 1125 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 TBC1D25Q3MII6 688 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 C4orf17Q53FE4 359 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 PERM1Q5SV97 790 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 ZFYVE27Q5T4F4 411 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 MEI1Q5TIA1 1274 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 SLC9A4Q6AI14 798 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 C19orf48Q6RUI8 117 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 CRTC1Q6UUV9 634 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 RBM44Q6ZP01 1051 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 RIPOR1Q6ZS17 1223 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 CEP128Q6ZU80 1094 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 Q6ZVL8 140 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 ZNF765Q7L2R6 523 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 HSD11B1LQ7Z5J1 315 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 RHOT1Q8IXI2 618 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 GSPT2Q8IYD1 628 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 NRSN1Q8IZ57 195 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 ZNF295-AS1Q8N0V1 137 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 ENDOVQ8N8Q3 282 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 GPR156Q8NFN8 814 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 ARRDC2Q8TBH0 407 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 GPBAR1Q8TDU6 330 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 IFT81Q8WYA0 676 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 OR1E3Q8WZA6 343 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 INPP5DQ92835 1189 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 KLHL29Q96CT2 875 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 SCARF2Q96GP6 870 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 LYSMD1Q96S90 227 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 CCDC3Q9BQI4 270 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 LGR4Q9BXB1 951 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 TDRD1Q9BXT4 1180 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 FGF22Q9HCT0 170 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms