RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 C11orf96Q7Z7L8 435 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 SIDT2Q8NBJ9 832 aaKnown RBP14.42□□□□□ -0.1
TRAF4-212ENST00000498540 GPR150Q8NGU9 434 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 THAP4Q8WY91 577 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 TRIB3Q96RU7 358 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 ADGRE3Q9BY15 652 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 GPR87Q9BY21 358 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 RAB33BQ9H082 229 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 RTN4Q9NQC3 1192 aaKnown RBP14.42□□□□□ -0.1
TRAF4-212ENST00000498540 LUZP4Q9P127 313 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 SEMA5BQ9P283 1151 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 NFKBIL1Q9UBC1 381 aaPredicted RBP14.42□□□□□ -0.1
TRAF4-212ENST00000498540 IP6K2Q9UHH9 426 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 TMPRSS11EQ9UL52 423 aa14.42□□□□□ -0.1
TRAF4-212ENST00000498540 PCDHGA9Q9Y5G4 932 aaKnown RBP14.42□□□□□ -0.1
TRAF4-212ENST00000498540 KCNK1O00180 336 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 JCHAINP01591 159 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 IDSP22304 550 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 CCL11P51671 97 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 ZBTB17Q13105 803 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 MRPL49Q13405 166 aaKnown RBP14.41□□□□□ -0.1
TRAF4-212ENST00000498540 PAPD7Q5XG87 772 aaKnown RBP14.41□□□□□ -0.1
TRAF4-212ENST00000498540 PDPK2PQ6A1A2 396 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 WASH2PQ6VEQ5 465 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 TMC3Q7Z5M5 1100 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 SYVN1Q86TM6 617 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 RBM12BQ8IXT5 1001 aaKnown RBP14.41□□□□□ -0.1
TRAF4-212ENST00000498540 PQLC3Q8N755 202 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 CNTD1Q8N815 330 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 SEC14L1Q92503 715 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 UBXN4Q92575 508 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 HDAC11Q96DB2 347 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 ZNF670Q9BS34 389 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 ING2Q9H160 280 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 CASS4Q9NQ75 786 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 WASH6PQ9NQA3 447 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 ACSS2Q9NR19 701 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 CUEDC1Q9NWM3 386 aaPredicted RBP14.41□□□□□ -0.1
TRAF4-212ENST00000498540 ZNF711Q9Y462 761 aa14.41□□□□□ -0.1
TRAF4-212ENST00000498540 TCP11X1B4DZS4 312 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 VEGFDO43915 354 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 CDK14O94921 469 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 BPIP17213 487 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 COL8A1P27658 744 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 PTGIRP43119 386 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 INPP5JQ15735 1006 aaPredicted RBP14.4□□□□□ -0.1
TRAF4-212ENST00000498540 EIF2S3LQ2VIR3 472 aaKnown RBP14.4□□□□□ -0.1
TRAF4-212ENST00000498540 ZNF787Q6DD87 383 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 TRAPPC5Q8IUR0 188 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 Q8NA96 180 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 CCNYQ8ND76 341 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 FAF2Q96CS3 445 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 ZNF514Q96K75 400 aaPredicted RBP14.4□□□□□ -0.1
TRAF4-212ENST00000498540 FCRL4Q96PJ5 515 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 MAP3K3Q99759 626 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 CEP41Q9BYV8 373 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 FGF21Q9NSA1 209 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 DOPEY1Q5JWR5 2465 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 CELSR2Q9HCU4 2923 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 CRYBG3Q68DQ2 2970 aa14.4□□□□□ -0.1
TRAF4-212ENST00000498540 CYP1A2P05177 515 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 MX2P20592 715 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 FECHP22830 423 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 RPS15P62841 145 aaKnown RBP14.39□□□□□ -0.11
TRAF4-212ENST00000498540 IFI35P80217 286 aaPredicted RBP14.39□□□□□ -0.11
TRAF4-212ENST00000498540 ACY1Q03154 408 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 GPS2Q13227 327 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 CHRNA6Q15825 494 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 PCSK7Q16549 785 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 HADHQ16836 314 aaKnown RBP14.39□□□□□ -0.11
TRAF4-212ENST00000498540 HGSNATQ68CP4 663 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 JMJD6Q6NYC1 403 aaPredicted RBP14.39□□□□□ -0.11
TRAF4-212ENST00000498540 KCTD6Q8NC69 237 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 ADAMTS17Q8TE56 1095 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 MFRPQ9BY79 579 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 GPR63Q9BZJ6 419 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 MAGEE1Q9HCI5 957 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 RAD18Q9NS91 495 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 FARSAQ9Y285 508 aaKnown RBP14.39□□□□□ -0.11
TRAF4-212ENST00000498540 PCSK5Q92824 1860 aa14.39□□□□□ -0.11
TRAF4-212ENST00000498540 MYO1FO00160 1098 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 AURKAO14965 403 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 CPNE3O75131 537 aaKnown RBP14.38□□□□□ -0.11
TRAF4-212ENST00000498540 SCRG1O75711 98 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 CEACAM4O75871 244 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 CLDN1O95832 211 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 HALP42357 657 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 TAS2R40P59535 323 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 PPIDQ08752 370 aaKnown RBP14.38□□□□□ -0.11
TRAF4-212ENST00000498540 TMEM115Q12893 351 aaPredicted RBP14.38□□□□□ -0.11
TRAF4-212ENST00000498540 GPR19Q15760 415 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 ATP13A5Q4VNC0 1218 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 FAM69BQ5VUD6 431 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 ZNF517Q6ZMY9 492 aaPredicted RBP14.38□□□□□ -0.11
TRAF4-212ENST00000498540 BPHLQ86WA6 291 aaPredicted RBP14.38□□□□□ -0.11
TRAF4-212ENST00000498540 SLC38A9Q8NBW4 561 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 MR1Q95460 341 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 IMP4Q96G21 291 aaKnown RBP14.38□□□□□ -0.11
TRAF4-212ENST00000498540 VPS35Q96QK1 796 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 BPIFA1Q9NP55 256 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms