RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 PRAMEP78395 509 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 XIAPP98170 497 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 CACNG1Q06432 222 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 PTK6Q13882 451 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 CLPPQ16740 277 aaPredicted RBP16.12■□□□□ 0.17
SF3A1-209ENST00000496189 AMZ1Q400G9 498 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 FNBP1LQ5T0N5 605 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 ZNF449Q6P9G9 518 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 IYDQ6PHW0 289 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 MAATS1Q7Z4T9 603 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 MARCH9Q86YJ5 346 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 LSMEM2Q8N112 164 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 OR10G6Q8NH81 332 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 SLC37A2Q8TED4 501 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 PATE1Q8WXA2 126 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 CXorf40BQ96DE9 158 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 CDKN2AIPNLQ96HQ2 116 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 KRT12Q99456 494 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 DPYSL5Q9BPU6 564 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 IL22Q9GZX6 179 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 SARS2Q9NP81 518 aaKnown RBP16.12■□□□□ 0.17
SF3A1-209ENST00000496189 AKAP7Q9P0M2 348 aaPredicted RBP16.12■□□□□ 0.17
SF3A1-209ENST00000496189 TBC1D29Q9UFV1 150 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 RABGEF1Q9UJ41 708 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 ANAPC5Q9UJX4 755 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 TMPRSS11EQ9UL52 423 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 RIMKLBQ9ULI2 386 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 ST14Q9Y5Y6 855 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 ZNF106Q9H2Y7 1883 aaKnown RBP16.12■□□□□ 0.17
SF3A1-209ENST00000496189 CCDC78A2IDD5 438 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 MROH6A6NGR9 719 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 QSOX1O00391 747 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 GPR39O43194 453 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 POP7O75817 140 aaKnown RBP16.11■□□□□ 0.17
SF3A1-209ENST00000496189 CPNE6O95741 557 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 VIPP01282 170 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 PTGIRP43119 386 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 TERF1P54274 439 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 GPLD1P80108 840 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 CAMK2BQ13554 666 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 KCNJ11Q14654 390 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 SEPT7Q16181 437 aaKnown RBP16.11■□□□□ 0.17
SF3A1-209ENST00000496189 KHDC1Q4VXA5 237 aaKnown RBP16.11■□□□□ 0.17
SF3A1-209ENST00000496189 CCDC38Q502W7 563 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 PCID2Q5JVF3 399 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 LYPLAL1Q5VWZ2 237 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 LRRC8BQ6P9F7 803 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 AFTPHQ6ULP2 937 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 DET1Q7L5Y6 550 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 SFTPA2Q8IWL1 248 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 PPIL6Q8IXY8 311 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 BEND7Q8N7W2 519 aaPredicted RBP16.11■□□□□ 0.17
SF3A1-209ENST00000496189 RASGEF1AQ8N9B8 481 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 KDF1Q8NAX2 398 aaPredicted RBP16.11■□□□□ 0.17
SF3A1-209ENST00000496189 MNS1Q8NEH6 495 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 PEX13Q92968 403 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 TMEM121BQ9BXQ6 578 aaPredicted RBP16.11■□□□□ 0.17
SF3A1-209ENST00000496189 EPB41L5Q9HCM4 733 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 XAB2Q9HCS7 855 aaKnown RBP16.11■□□□□ 0.17
SF3A1-209ENST00000496189 PRDM8Q9NQV8 689 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 ZDHHC3Q9NYG2 299 aa16.11■□□□□ 0.17
SF3A1-209ENST00000496189 PCYT1BQ9Y5K3 369 aaPredicted RBP16.11■□□□□ 0.17
SF3A1-209ENST00000496189 AGAP14A8MT82 685 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 CCL22O00626 93 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 DUX1O43812 170 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 ATP1B2P14415 290 aaPredicted RBP16.1■□□□□ 0.17
SF3A1-209ENST00000496189 ACRV1P26436 265 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 PBLDP30039 288 aaPredicted RBP16.1■□□□□ 0.17
SF3A1-209ENST00000496189 GRIA1P42261 906 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 INHBCP55103 352 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 SESN2P58004 480 aaPredicted RBP16.1■□□□□ 0.17
SF3A1-209ENST00000496189 OR1D5P58170 312 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 CYP4F3Q08477 520 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 EIF3IQ13347 325 aaKnown RBP16.1■□□□□ 0.17
SF3A1-209ENST00000496189 NR1D2Q14995 579 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 RTP5Q14D33 572 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 AARS2Q5JTZ9 985 aaKnown RBP16.1■□□□□ 0.17
SF3A1-209ENST00000496189 TSTD2Q5T7W7 516 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 ARMC3Q5W041 872 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 ZNF572Q7Z3I7 529 aaPredicted RBP16.1■□□□□ 0.17
SF3A1-209ENST00000496189 ZNF438Q7Z4V0 828 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 SERPINA9Q86WD7 417 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 JAMLQ86YT9 394 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 ZNF547Q8IVP9 402 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 RBM12BQ8IXT5 1001 aaKnown RBP16.1■□□□□ 0.17
SF3A1-209ENST00000496189 MCUQ8NE86 351 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 OR6P1Q8NGX9 317 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 WDR36Q8NI36 951 aaKnown RBP16.1■□□□□ 0.17
SF3A1-209ENST00000496189 CPT1BQ92523 772 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 SGF29Q96ES7 293 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 EPB41L1Q9H4G0 881 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 FAM96AQ9H5X1 160 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 POLR1BQ9H9Y6 1135 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 SAMD15Q9P1V8 674 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 CPNE7Q9UBL6 633 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 DKK4Q9UBT3 224 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 TCAF1Q9Y4C2 921 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 PCDHB1Q9Y5F3 818 aa16.1■□□□□ 0.17
SF3A1-209ENST00000496189 ZFC3H1O60293 1989 aaKnown RBP16.09■□□□□ 0.17
SF3A1-209ENST00000496189 CCDC187A0A096LP49 1063 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms