RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TDRD9Q8NDG6 1382 aaKnown RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 ITIH6Q6UXX5 1313 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 A0A087X0M5 115 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 A0A1B0GX30 115 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 DUXAA6NLW8 204 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 IFNL4K9M1U5 179 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 TGFB1I1O43294 461 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 CCNDBP1O95273 360 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 CLEC3BP05452 202 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 PLA2G4BP0C869 781 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 GATA2P23769 480 aaPredicted RBP3.47□□□□□ -1.85
VPS50-219ENST00000495039 CHMP24386 653 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 PSMA4P25789 261 aaKnown RBP3.47□□□□□ -1.85
VPS50-219ENST00000495039 ICAM3P32942 547 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 BSGP35613 385 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 RGS2P41220 211 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 MLLT10P55197 1068 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 RPS3AP61247 264 aaKnown RBP3.47□□□□□ -1.85
VPS50-219ENST00000495039 OLR1P78380 273 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 SORDQ00796 357 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 GOLGA8DPQ0D2H9 430 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 FRG1Q14331 258 aaKnown RBP3.47□□□□□ -1.85
VPS50-219ENST00000495039 FGFBP1Q14512 234 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 DRAP1Q14919 205 aaPredicted RBP3.47□□□□□ -1.85
VPS50-219ENST00000495039 COL28A1Q2UY09 1125 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 DPCR1Q3MIW9 517 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 KIAA1644Q3SXP7 199 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 ZNF280DQ6N043 979 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 ZNF774Q6NX45 483 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 FAM180BQ6P0A1 224 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 TSSK4Q6SA08 328 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 SH2D5Q6ZV89 423 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 ANO5Q75V66 913 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 PSPC1Q8WXF1 523 aaKnown RBP3.47□□□□□ -1.85
VPS50-219ENST00000495039 FAM149B1Q96BN6 582 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 INTS12Q96CB8 462 aaKnown RBP3.47□□□□□ -1.85
VPS50-219ENST00000495039 FAM110AQ9BQ89 295 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 UBA5Q9GZZ9 404 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 KIF9Q9HAQ2 790 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 ASAH2Q9NR71 780 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 SLC6A13Q9NSD5 602 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 DIAPH3Q9NSV4 1193 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 MKLN1Q9UL63 735 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 PADI3Q9ULW8 664 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 PYGO1Q9Y3Y4 419 aa3.47□□□□□ -1.85
VPS50-219ENST00000495039 F5H0A9 414 aaPredicted RBP3.46□□□□□ -1.86
VPS50-219ENST00000495039 FTCDO95954 541 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 NFKBIAP25963 317 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 PIP4K2AP48426 406 aaPredicted RBP3.46□□□□□ -1.86
VPS50-219ENST00000495039 BMXP51813 675 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 OLIG2Q13516 323 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 NAE1Q13564 534 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 ACVR2BQ13705 512 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 TCTEX1D4Q5JR98 221 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 FFAR4Q5NUL3 377 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 CCDC30Q5VVM6 783 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 TRIM65Q6PJ69 517 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 PIWIL4Q7Z3Z4 852 aaKnown RBP3.46□□□□□ -1.86
VPS50-219ENST00000495039 ERC1Q8IUD2 1116 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 ACVR1CQ8NER5 493 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 HMGCLL1Q8TB92 370 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 GRHL3Q8TE85 626 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 GRAMD2BQ96HH9 432 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 ABHD8Q96I13 439 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 MAP7D2Q96T17 732 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 MAF1Q9H063 256 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 TKTL2Q9H0I9 626 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 ZBTB20Q9HC78 741 aaPredicted RBP3.46□□□□□ -1.86
VPS50-219ENST00000495039 KRT84Q9NSB2 600 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 TCP11L1Q9NUJ3 509 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 EHD2Q9NZN4 543 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 DLGAP2Q9P1A6 1054 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 LIMA1Q9UHB6 759 aaKnown RBP3.46□□□□□ -1.86
VPS50-219ENST00000495039 KLHL20Q9Y2M5 609 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 CEPT1Q9Y6K0 416 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 CAPN7Q9Y6W3 813 aa3.46□□□□□ -1.86
VPS50-219ENST00000495039 FAM237AA0A1B0GTK4 181 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 A0A1W2PRG0 241 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 RNASEH2AO75792 299 aaKnown RBP3.45□□□□□ -1.86
VPS50-219ENST00000495039 BAIAP3O94812 1187 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 IGHV4-38-2P0DP08 117 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 ACADSP16219 412 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 GEMIN4P57678 1058 aaKnown RBP3.45□□□□□ -1.86
VPS50-219ENST00000495039 ALG11Q2TAA5 492 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 SNAI3Q3KNW1 292 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 C6orf141Q5SZD1 244 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 TBC1D1Q86TI0 1168 aaPredicted RBP3.45□□□□□ -1.86
VPS50-219ENST00000495039 HAPLN4Q86UW8 402 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 CDC20BQ86Y33 519 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 MAP7D3Q8IWC1 876 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 NGEFQ8N5V2 710 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 PDILTQ8N807 584 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 ZNF614Q8N883 585 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 TMEM116Q8NCL8 245 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 RHBDF1Q96CC6 855 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 SLC41A2Q96JW4 573 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 TMEM68Q96MH6 324 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 AGAP3Q96P47 875 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 STRA6Q9BX79 667 aa3.45□□□□□ -1.86
VPS50-219ENST00000495039 IFIH1Q9BYX4 1025 aaKnown RBP3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms