RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GALNT2Q10471 571 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CCNIQ14094 377 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PAFAH1B3Q15102 231 aaKnown RBP10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HECTD2Q5U5R9 776 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PPP2R2DQ66LE6 453 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C11orf96Q7Z7L8 435 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TCAIMQ8N3R3 496 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CDK15Q96Q40 435 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C17orf80Q9BSJ5 609 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FANCEQ9HB96 536 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZFP14Q9HCL3 533 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TAS2R13Q9NYV9 303 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZNF221Q9UK13 617 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CDC14AQ9UNH5 594 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SYNDIG1LA6NDD5 238 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FAM155AB1AL88 458 aaPredicted RBP10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLCO1B7G3V0H7 640 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DENRO43583 198 aaKnown RBP10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ARSAP15289 507 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 AOC1P19801 751 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ECT2LQ008S8 904 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 VAC14Q08AM6 782 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FASTKQ14296 549 aaKnown RBP10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KRT33BQ14525 404 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TMEM199Q8N511 208 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CASS4Q9NQ75 786 aa10.65□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TNS1Q9HBL0 1735 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 UBDO15205 165 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MAFKO60675 156 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KRT6AP02538 564 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KRT6BP04259 564 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CRHR1P34998 444 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NIPAL4Q0D2K0 466 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRKAA1Q13131 559 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HNRNPDQ14103 355 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CAPRIN1Q14444 709 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 Q6ZNX1 250 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PAGE2Q7Z2X7 111 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RD3Q7Z3Z2 195 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IGSF21Q96ID5 467 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 C2orf49Q9BVC5 232 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IRF2BPLQ9H1B7 796 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC25A51Q9H1U9 297 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DYRK4Q9NR20 520 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZDHHC7Q9NXF8 308 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MARCH4Q9P2E8 410 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TBC1D14Q9P2M4 693 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FAM149AA5PLN7 773 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NPEPPSL1A6NEC2 478 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZSCAN5BA6NJL1 495 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OR2AG2A6NM03 316 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TEX28O15482 410 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PARNO95453 639 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GLUD1P00367 558 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CES1P23141 567 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SYTL3Q4VX76 610 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CPNE9Q8IYJ1 553 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LINC01599Q8WXQ3 324 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LPGAT1Q92604 370 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PROX1Q92786 737 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SH3KBP1Q96B97 665 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRIM8Q9BZR9 551 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OSGEPL1Q9H4B0 414 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 EML4Q9HC35 981 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 WNT6Q9Y6F9 365 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RANBP2P49792 3224 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PTPRZ1P23471 2315 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TBC1D3BA6NDS4 549 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FAM159BA6NKW6 160 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 EVPLLA8MZ36 301 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRIM24O15164 1050 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TNFRSF21O75509 655 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DDX5P17844 614 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ATP6V1B2P21281 511 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CDKN1CP49918 316 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RPL14P50914 215 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IL5RAQ01344 420 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NRG1Q02297 640 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRAF3Q13114 568 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TSNQ15631 228 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ANKDD1AQ495B1 522 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC9B1Q4ZJI4 515 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SPANXN2Q5MJ10 180 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NECAB2Q7Z6G3 386 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ITIH5Q86UX2 942 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IQCF2Q8IXL9 164 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PGBD3Q8N328 593 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PDPRQ8NCN5 879 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KREMEN2Q8NCW0 462 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CLHC1Q8NHS4 586 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZNF461Q8TAF7 563 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 UBASH3BQ8TF42 649 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ARNTL2Q8WYA1 636 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MED8Q96G25 268 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KLHL32Q96NJ5 620 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OR52B2Q96RD2 323 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 BDH2Q9BUT1 245 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ACAT2Q9BWD1 397 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 EPS8L2Q9H6S3 715 aa10.64□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NSMCE4AQ9NXX6 385 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms