RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PRR35P0CG20 571 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 CHRM1P11229 460 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 PABPC1P11940 636 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 HGFP14210 728 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 CARD16Q5EG05 197 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 LRRC66Q68CR7 880 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 HACD2Q6Y1H2 254 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 MACC1Q6ZN28 852 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 DPY19L3Q6ZPD9 716 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 GPRIN3Q6ZVF9 776 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 EFL1Q7Z2Z2 1120 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 NXPE1Q8N323 547 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 MIER2Q8N344 545 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 POF1BQ8WVV4 589 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 MCCC1Q96RQ3 725 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 ZNF382Q96SR6 550 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 RAD9AQ99638 391 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 ECSITQ9BQ95 431 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 ZDHHC6Q9H6R6 413 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 TDP1Q9NUW8 608 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 ADA2Q9NZK5 511 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 NOTCH4Q99466 2003 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 AGAP14A8MT82 685 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 ACOT8O14734 319 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 BCAS2O75934 225 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 PTPN5P54829 565 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 ARHGAP15Q53QZ3 475 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 XKR7Q5GH72 579 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 C8orf82Q6P1X6 216 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 USP45Q70EL2 814 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 IRF7Q92985 503 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 HTATIP2Q9BUP3 242 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 BCAP29Q9UHQ4 241 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 SLCO3A1Q9UIG8 710 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 PLXNB3Q9ULL4 1909 aa20.83■□□□□ 0.93
CCDC88B-208ENST00000492980 TRIM16O95361 564 aa20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 LHCGRP22888 699 aa20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 RGS4P49798 205 aa20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 NME5P56597 212 aa20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 PCBP2Q15366 365 aaKnown RBP eCLIP20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 C18orf21Q32NC0 220 aaPredicted RBP20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 OGFOD2Q6N063 350 aa20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 BHLHE22Q8NFJ8 381 aaPredicted RBP20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 SPPL3Q8TCT6 385 aa20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 BADQ92934 168 aa20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 SDR39U1Q9NRG7 319 aaPredicted RBP20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 LAMA2P24043 3122 aaKnown RBP20.83■□□□□ 0.92
CCDC88B-208ENST00000492980 TRIM24O15164 1050 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 MATN4O95460 622 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 POP4O95707 220 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 CHEK2O96017 543 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 BLMHQ13867 455 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 GPRC6AQ5T6X5 926 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 MYO1HQ8N1T3 1032 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 ZBTB2Q8N680 514 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 PDPRQ8NCN5 879 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 FAM156AQ8NDB6 213 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 OR52B6Q8NGF0 335 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 LINC00597Q9H2U6 94 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 SPHK2Q9NRA0 654 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 PSMD13Q9UNM6 376 aa20.82■□□□□ 0.92
CCDC88B-208ENST00000492980 BBIP1A8MTZ0 92 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 NR5A2O00482 541 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 GIPC1O14908 333 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 CASQ2O14958 399 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 FFAR2O15552 330 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 OR4F21O95013 312 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 UGT2B4P06133 528 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 TYRP14679 529 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 DGKAP23743 735 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 PTSQ03393 145 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 FPGSQ05932 587 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 ZNF77Q15935 545 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 GSTA3Q16772 222 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 TMEM240Q5SV17 173 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 LPCAT4Q643R3 524 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 Q6ZVU0 165 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 RTL10Q7L3V2 364 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 RETREG3Q86VR2 466 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 CHST14Q8NCH0 376 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 ASIC4Q96FT7 647 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 ZNF641Q96N77 438 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 SPAG4Q9NPE6 437 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 SUCOQ9UBS9 1254 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 TNPO3Q9Y5L0 923 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 LIN7AO14910 233 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 RAD51BO15315 384 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 S100BP04271 92 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 IDO1P14902 403 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 TCN1P20061 433 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 ERVPABLB-1P60509 514 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 MRPS22P82650 360 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 LAYNQ6UX15 382 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 SPATA19Q7Z5L4 167 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 ADIPOR2Q86V24 386 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 ASB9Q96DX5 294 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 ACOX2Q99424 681 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 MRPL40Q9NQ50 206 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 CROTQ9UKG9 612 aa20.81■□□□□ 0.92
CCDC88B-208ENST00000492980 OARD1Q9Y530 152 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms