RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 VDRP11473 427 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CCNB1P14635 433 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CAPN3P20807 821 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 FPR2P25090 351 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 AK4P27144 223 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 HTR1EP28566 365 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CASP1P29466 404 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 SSTR2P30874 369 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 DNAJA1P31689 397 aaKnown RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CCR1P32246 355 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 BUD31P41223 144 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 GLRBP48167 497 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 ART1P52961 327 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CDH4P55283 916 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 IL10RAQ13651 578 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 VWA2Q5GFL6 755 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 RETSATQ6NUM9 610 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 SLC30A9Q6PML9 568 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 TFAP2DQ7Z6R9 452 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 NRROSQ86YC3 692 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 RASGRP3Q8IV61 690 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 NAGSQ8N159 534 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 NXPE1Q8N323 547 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CELF2-AS1Q8N7Q2 184 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 PLA2G15Q8NCC3 412 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 OR10G6Q8NH81 332 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 GOLGA5Q8TBA6 731 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CT55Q8WUE5 264 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 TFAP2BQ92481 460 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 NCSTNQ92542 709 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 FUBP1Q96AE4 644 aaKnown RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 HDAC11Q96DB2 347 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 ZSCAN31Q96LW9 406 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 GSDMCQ9BYG8 508 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 LRRC27Q9C0I9 530 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 ILKAPQ9H0C8 392 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 SIK2Q9H0K1 926 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 TNMDQ9H2S6 317 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 FAM204AQ9H8W3 233 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CHST11Q9NPF2 352 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 ST7Q9NRC1 585 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 LNPEPQ9UIQ6 1025 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 PADI1Q9ULC6 663 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 G3BP2Q9UN86 482 aaKnown RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 B3GNT3Q9Y2A9 372 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 NTNG1Q9Y2I2 539 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 FRMD4BQ9Y2L6 1034 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 NEU2Q9Y3R4 380 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 PCDHGA6Q9Y5G7 932 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 SRPRBQ9Y5M8 271 aaKnown RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 CLIC4Q9Y696 253 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 PMF1-BGLAPU3KQ54 211 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 ARHGEF17Q96PE2 2063 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-210ENST00000485247 POLEQ07864 2286 aa5.3□□□□□ -1.56
PTPN4-210ENST00000485247 AKAP9Q99996 3911 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 A0A1B0GUH1 482 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 PRSS38A1L453 326 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 CEACAM4O75871 244 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 NDUFA10O95299 355 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 CALCAP01258 141 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 IGLV3-25P01717 112 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 NR3C1P04150 777 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 C8BP07358 591 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 SLC2A3P11169 496 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 KELP23276 732 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 OR1E1P30953 314 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 GARSP41250 739 aaKnown RBP5.29□□□□□ -1.56
PTPN4-210ENST00000485247 ECI1P42126 302 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 SLURP1P55000 103 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 GFRA1P56159 465 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 ARF5P84085 180 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 AMPD3Q01432 767 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 CEBPZQ03701 1054 aaKnown RBP5.29□□□□□ -1.56
PTPN4-210ENST00000485247 ILF3Q12906 894 aaKnown RBP eCLIP5.29□□□□□ -1.56
PTPN4-210ENST00000485247 MTM1Q13496 603 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 RAPGEF1Q13905 1077 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 SLC9A5Q14940 896 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 FXNQ16595 210 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 UGT8Q16880 541 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 ZNF630Q2M218 657 aaPredicted RBP5.29□□□□□ -1.56
PTPN4-210ENST00000485247 CRB2Q5IJ48 1285 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 EFHC1Q5JVL4 640 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 DENND5AQ6IQ26 1287 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 WDR74Q6RFH5 385 aaPredicted RBP5.29□□□□□ -1.56
PTPN4-210ENST00000485247 LCLAT1Q6UWP7 414 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 GDPD4Q6W3E5 623 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 LIPIQ6XZB0 460 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 SETD3Q86TU7 594 aaPredicted RBP5.29□□□□□ -1.56
PTPN4-210ENST00000485247 HPS6Q86YV9 775 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 Q8N1Y9 231 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 ITLN2Q8WWU7 325 aaPredicted RBP5.29□□□□□ -1.56
PTPN4-210ENST00000485247 CPA5Q8WXQ8 436 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 SEC14L1Q92503 715 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 RELTQ969Z4 430 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 VOPP1Q96AW1 172 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 C1orf159Q96HA4 380 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 HSFY1Q96LI6 401 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 BARD1Q99728 777 aaKnown RBP5.29□□□□□ -1.56
PTPN4-210ENST00000485247 SYT3Q9BQG1 590 aa5.29□□□□□ -1.56
PTPN4-210ENST00000485247 ZSWIM1Q9BR11 485 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms