RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	SEMA6C	Q9H3T2	930 aa		11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	SARS2	Q9NP81	518 aa	Known RBP	11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	IL26	Q9NPH9	171 aa		11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	CPNE7	Q9UBL6	633 aa		11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	KLHL3	Q9UH77	587 aa		11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	FEZ2	Q9UHY8	353 aa	Predicted RBP	11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	R3HDM2	Q9Y2K5	976 aa	Known RBP	11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	ST14	Q9Y5Y6	855 aa		11.36	□□□□□ -0.59
CPNE1-222	ENST00000473373	IGHV1OR21-1	A0A087WYE8	117 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	TCRBV7S2A1N4T	A0A589	114 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	CCDC78	A2IDD5	438 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	GPR39	O43194	453 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	CEP104	O60308	925 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	C1QL1	O75973	258 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	SRP72	O76094	671 aa	Known RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	DXO	O77932	396 aa	Known RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	TPH1	P17752	444 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	ITIH1	P19827	911 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	STIP1	P31948	543 aa	Known RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	FDFT1	P37268	417 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	MLLT3	P42568	568 aa	Predicted RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	FASLG	P48023	281 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	PDX1	P52945	283 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	DRG2	P55039	364 aa	Known RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	GDF10	P55107	478 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	CXADR	P78310	365 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	KRT33B	Q14525	404 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	GSE1	Q14687	1217 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	POU6F1	Q14863	301 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	PLCL1	Q15111	1095 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	CLPP	Q16740	277 aa	Predicted RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	FNBP1L	Q5T0N5	605 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	GPRC6A	Q5T6X5	926 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	MEI1	Q5TIA1	1274 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	ZNF449	Q6P9G9	518 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	IYD	Q6PHW0	289 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	AMZ2	Q86W34	360 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	SLC13A5	Q86YT5	568 aa	Predicted RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	SFRP1	Q8N474	314 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	OR13C4	Q8NGS5	318 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	ULK4	Q96C45	1275 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	FCRL3	Q96P31	734 aa	Predicted RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	GRPEL1	Q9HAV7	217 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	PIH1D1	Q9NWS0	290 aa	Known RBP	11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	PSMD13	Q9UNM6	376 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	PCDHB11	Q9Y5F2	797 aa		11.35	□□□□□ -0.59
CPNE1-222	ENST00000473373	PMS2P1	A4D2B8	440 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	CHUK	O15111	745 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	LIAS	O43766	372 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	METTL18	O95568	372 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	EML2	O95834	649 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	CD1C	P29017	333 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	SLC5A2	P31639	672 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	MC4R	P32245	332 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	ADRA1A	P35348	466 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	UCN	P55089	124 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	TMPRSS3	P57727	454 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	KLF1	Q13351	362 aa	Predicted RBP	11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	TRA2A	Q13595	282 aa	Known RBP eCLIP	11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	KHDC1	Q4VXA5	237 aa	Known RBP	11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	TMEM71	Q6P5X7	295 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	RANBP10	Q6VN20	620 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	ZNF438	Q7Z4V0	828 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	C17orf82	Q86X59	251 aa	Predicted RBP	11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	SPACA3	Q8IXA5	215 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	AGBL5	Q8NDL9	886 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	DDHD1	Q8NEL9	900 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	OR4D9	Q8NGE8	314 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	SLC35B2	Q8TB61	432 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	ZNF514	Q96K75	400 aa	Predicted RBP	11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	GORASP1	Q9BQQ3	440 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	FAM96A	Q9H5X1	160 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	ASCL3	Q9NQ33	180 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	SLC23A2	Q9UGH3	650 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	PPP2R2C	Q9Y2T4	447 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	KCTD3	Q9Y597	815 aa		11.34	□□□□□ -0.59
CPNE1-222	ENST00000473373	IGHV5-10-1	A0A0J9YXX1	117 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	CCL22	O00626	93 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	HGS	O14964	777 aa	Predicted RBP	11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	ATXN7	O15265	892 aa	Predicted RBP	11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	KCNJ13	O60928	360 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	POP7	O75817	140 aa	Known RBP	11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	RASSF9	O75901	435 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	AP2A1	O95782	977 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	FGG	P02679	453 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	SLC35G4	P0C7Q5	338 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	TYRP1	P17643	537 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	MSN	P26038	577 aa	Known RBP	11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	CXCR5	P32302	372 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	CLCNKA	P51800	687 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	LIMK2	P53671	638 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	TERF1	P54274	439 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	EPHA4	P54764	986 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	BASP1	P80723	227 aa	Known RBP	11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	CCZ1B	P86790	482 aa		11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	CCZ1	P86791	482 aa	Predicted RBP	11.33	□□□□□ -0.6
CPNE1-222	ENST00000473373	CDH17	Q12864	832 aa		11.33	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms