RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TMEM175Q9BSA9 504 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 PKP3Q9Y446 797 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 PIKFYVEQ9Y2I7 2098 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 SYNCRIPO60506 623 aaKnown RBP18.86■□□□□ 0.61
VIM-203ENST00000469543 RSL1D1O76021 490 aaKnown RBP18.86■□□□□ 0.61
VIM-203ENST00000469543 LRRC73Q5JTD7 316 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 IL27RAQ6UWB1 636 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 MBOAT1Q6ZNC8 495 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 RBM44Q6ZP01 1051 aaKnown RBP18.86■□□□□ 0.61
VIM-203ENST00000469543 GPRIN3Q6ZVF9 776 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 PDZD8Q8NEN9 1154 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 KCNJ9Q92806 393 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 TMEM79Q9BSE2 394 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 APOL5Q9BWW9 433 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 ABCD2Q9UBJ2 740 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 OR51B4Q9Y5P0 310 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 CROCCQ5TZA2 2017 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 C1orf232A0A0U1RR37 186 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 A0A1B0GVG6 124 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 CCDC160A6NGH7 325 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 GAPDHSO14556 408 aaPredicted RBP18.86■□□□□ 0.61
VIM-203ENST00000469543 FFAR3O14843 346 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 INPP4BO15327 924 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 GPR42O15529 346 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 AP1G1O43747 822 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 KLK8O60259 260 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 GREM1O60565 184 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 FAM58BPP0C7Q3 252 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 CA8P35219 290 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 DGKQP52824 942 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 CYP4F8P98187 520 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 SLC5A9Q2M3M2 681 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 RFTN2Q52LD8 501 aaPredicted RBP18.86■□□□□ 0.61
VIM-203ENST00000469543 SBSNQ6UWP8 590 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 HACD2Q6Y1H2 254 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 CHST9Q7L1S5 443 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 TSPAN33Q86UF1 283 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 SERPINA9Q86WD7 417 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 ZSWIM9Q86XI8 627 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 TMEM126BQ8IUX1 230 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 SFRP1Q8N474 314 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 METTL6Q8TCB7 284 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 PIH1D2Q8WWB5 315 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 ALG14Q96F25 216 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 TRIM4Q9C037 500 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 P2RY12Q9H244 342 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 Q9H521 79 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 FARSBQ9NSD9 589 aaKnown RBP18.86■□□□□ 0.61
VIM-203ENST00000469543 PCDHA9Q9Y5H5 950 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 CPQQ9Y646 472 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 SLC30A1Q9Y6M5 507 aa18.86■□□□□ 0.61
VIM-203ENST00000469543 A0A1W2PP18 115 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 KRT87PA6NCN2 255 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 ARPC2O15144 300 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 FZD6O60353 706 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 PRR35P0CG20 571 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 UROSP10746 265 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 HMGCLP35914 325 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 HSPA7P48741 367 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 ABRAXAS2Q15018 415 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 PHKG1Q16816 387 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 XKR7Q5GH72 579 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 CBR4Q8N4T8 237 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 MINDY1Q8N5J2 469 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 OR4F6Q8NGB9 312 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 DDI1Q8WTU0 396 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 MYLIPQ8WY64 445 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 PBXIP1Q96AQ6 731 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 MYRFLQ96LU7 910 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 ASB8Q9H765 288 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 IL26Q9NPH9 171 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 DUS2Q9NX74 493 aaKnown RBP18.85■□□□□ 0.61
VIM-203ENST00000469543 ELOVL2Q9NXB9 296 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 ANAPC1Q9H1A4 1944 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 SLC22A3O75751 556 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 MATN4O95460 622 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 G6PDP11413 515 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 KCNK10P57789 538 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 MYLK3Q32MK0 819 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 RFLNAQ6ZTI6 216 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 CMTR2Q8IYT2 770 aaKnown RBP18.85■□□□□ 0.61
VIM-203ENST00000469543 CATSPER1Q8NEC5 780 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 TMEM125Q96AQ2 219 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 ZNF597Q96LX8 424 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 HOPXQ9BPY8 73 aaPredicted RBP18.85■□□□□ 0.61
VIM-203ENST00000469543 AIG1Q9NVV5 245 aa18.85■□□□□ 0.61
VIM-203ENST00000469543 CCDC154A6NI56 674 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 OR7A17O14581 309 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 GIPC1O14908 333 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 VILLO15195 856 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 HSPA8P11142 646 aaKnown RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 GSK3BP49841 420 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 CDH15P55291 814 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 PLOD1Q02809 727 aaPredicted RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 RCAN2Q14206 197 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 CYP51A1Q16850 503 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 PTRHD1Q6GMV3 140 aaKnown RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 EPHX4Q8IUS5 362 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 CHERPQ8IWX8 916 aaKnown RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 ADGRG2Q8IZP9 1017 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms