RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 HAUS1Q96CS2 278 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 C9orf72Q96LT7 481 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 TRIM5Q9C035 493 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 APMAPQ9HDC9 416 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 IL26Q9NPH9 171 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 STARD5Q9NSY2 213 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 POT1Q9NUX5 634 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 SIDT1Q9NXL6 827 aaKnown RBP16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 IL17CQ9P0M4 197 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 TRHDEQ9UKU6 1024 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 TMEM184BQ9Y519 407 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 PCDHA13Q9Y5I0 950 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 SLC30A1Q9Y6M5 507 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 ZNF106Q9H2Y7 1883 aaKnown RBP16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 F5H423 210 aaPredicted RBP16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 POLR1CO15160 346 aaPredicted RBP16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 KCNJ13O60928 360 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 WISP1O95388 367 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 AMD1P17707 334 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 RPL10P27635 214 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 GFERP55789 205 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 XRCC4Q13426 336 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 SPA17Q15506 151 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 BBS12Q6ZW61 710 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 GLT6D1Q7Z4J2 308 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 RBM12BQ8IXT5 1001 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 IPMKQ8NFU5 416 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 TTC25Q96NG3 672 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 FAM117AQ9C073 453 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 ZCCHC2Q9C0B9 1178 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 TRIT1Q9H3H1 467 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 LUC7LQ9NQ29 371 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 RSPH14Q9UHP6 348 aa16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 HEMK1Q9Y5R4 338 aaPredicted RBP16.29■□□□□ 0.2
CCDC28B-204ENST00000469003 OR52A4PA6NMU1 304 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 ZNF891A8MT65 544 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 APOC4-APOC2K7ER74 178 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 TOX3O15405 576 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 PPFIA2O75334 1257 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 STK17BO94768 372 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 APOC2P02655 101 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 TYRP1P17643 537 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 CYLC1P35663 651 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 DRG2P55039 364 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 ABHD18Q0P651 414 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 CLCA4Q14CN2 919 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 CHRNA6Q15825 494 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 LDLRAP1Q5SW96 308 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 FAM151BQ6UXP7 276 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 TIPARPQ7Z3E1 657 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 BLOC1S5Q8TDH9 187 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 KRT35Q92764 455 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 KIAA1143Q96AT1 154 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 CXorf40BQ96DE9 158 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 SLC45A3Q96JT2 553 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 TGM7Q96PF1 710 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 EFHD1Q9BUP0 239 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 GPN2Q9H9Y4 310 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 SLC40A1Q9NP59 571 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 GEMIN8Q9NWZ8 242 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 TFR2Q9UP52 801 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 PKP3Q9Y446 797 aa16.28■□□□□ 0.2
CCDC28B-204ENST00000469003 GLYATL1P3A0A0U1RQE8 302 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 H7C0C1 242 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 UGT1A9O60656 530 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 DLGAP3O95886 979 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 UGT1A6P19224 532 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 UGT1A1P22309 533 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 UGT1A4P22310 534 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 HALP42357 657 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 CAPZBP47756 277 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 ATP5OP48047 213 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 GEMP55040 296 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 COPS2P61201 443 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 DMPKQ09013 629 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 ITGA9Q13797 1035 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 MAP7Q14244 749 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 GPR18Q14330 331 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 BORAQ6PGQ7 559 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 PRICKLE2Q7Z3G6 844 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 DAAM2Q86T65 1068 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 AMZ2Q86W34 360 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 RASGEF1AQ8N9B8 481 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 DDHD1Q8NEL9 900 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 RSC1A1Q92681 617 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 CATSPER2Q96P56 530 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 HEMGNQ9BXL5 484 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 FSD1LQ9BXM9 530 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 GBA3Q9H227 469 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 ADNPQ9H2P0 1102 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 ZNF768Q9H5H4 540 aaKnown RBP16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 UGT1A7Q9HAW7 530 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 UGT1A10Q9HAW8 530 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 UGT1A8Q9HAW9 530 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 TRIM10Q9UDY6 481 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 WDR37Q9Y2I8 494 aa16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 DNMT3AQ9Y6K1 912 aaPredicted RBP16.27■□□□□ 0.2
CCDC28B-204ENST00000469003 COL12A1Q99715 3063 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 LOC101059948A0A1B0GTJ6 334 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 GAPDHSO14556 408 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms