RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MSANTD2Q6P1R3 559 aa12.31□□□□□ -0.44
HDAC4-208ENST00000463007 RANBP10Q6VN20 620 aa12.31□□□□□ -0.44
HDAC4-208ENST00000463007 FBXO39Q8N4B4 442 aa12.31□□□□□ -0.44
HDAC4-208ENST00000463007 CLHC1Q8NHS4 586 aa12.31□□□□□ -0.44
HDAC4-208ENST00000463007 GLMNQ92990 594 aa12.31□□□□□ -0.44
HDAC4-208ENST00000463007 C17orf80Q9BSJ5 609 aa12.31□□□□□ -0.44
HDAC4-208ENST00000463007 TOR3AQ9H497 397 aa12.31□□□□□ -0.44
HDAC4-208ENST00000463007 MRM3Q9HC36 420 aaKnown RBP12.31□□□□□ -0.44
HDAC4-208ENST00000463007 ITM2CQ9NQX7 267 aa12.31□□□□□ -0.44
HDAC4-208ENST00000463007 NPEPPSL1A6NEC2 478 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SCAMP3O14828 347 aaKnown RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 MATN3O15232 486 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 GOT2P00505 430 aaKnown RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 CAPNS1P04632 268 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 CDKN1CP49918 316 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 PSMD5Q16401 504 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 CLLU1OSQ5K130 101 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 METTL23Q86XA0 190 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SFRP1Q8N474 314 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ITFG1Q8TB96 612 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 TOP1MTQ969P6 601 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 TMEM125Q96AQ2 219 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ROPN1LQ96C74 230 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 TSPAN17Q96FV3 270 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 HMCESQ96FZ2 354 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 MYOCQ99972 504 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 HOPXQ9BPY8 73 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 BPIFA1Q9NP55 256 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 FAM92AA1XBS5 289 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SYCE1LA8MT33 242 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 AP3B1O00203 1094 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SNX2O60749 519 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 S1PR4O95977 384 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 CYBBP04839 570 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SLC2A3P11169 496 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ITGB6P18564 788 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 PIGAP37287 484 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 FAM189BP81408 668 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SEMA3AQ14563 771 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 CCNYL2Q5T2Q4 361 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 INTS11Q5TA45 600 aaKnown RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 MARC1Q5VT66 337 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 KIAA0930Q6ICG6 404 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 PAF1Q8N7H5 531 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 STON2Q8WXE9 905 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 HTRA1Q92743 480 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 NRBF2Q96F24 287 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 C1orf74Q96LT6 269 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 BDH2Q9BUT1 245 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 CCDC68Q9H2F9 335 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 PRDM5Q9NQX1 630 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 TRMT13Q9NUP7 481 aaKnown RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ZNF229Q9UJW7 825 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 IKZF3Q9UKT9 509 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 BAG5Q9UL15 447 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ASB1Q9Y576 335 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 PCDHGA8Q9Y5G5 932 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 HS3ST4Q9Y661 456 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 TMEM88BA6NKF7 163 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 AQP12BA6NM10 295 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 IQCF5A8MTL0 148 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 H0YJX3 145 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 FFAR3O14843 346 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 GPR42O15529 346 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SNAP91O60641 907 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 GMNNO75496 209 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 OR4F21O95013 312 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 JAK1P23458 1154 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 DCKP27707 260 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 CLCN5P51795 746 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 PRKCZQ05513 592 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SIM2Q14190 667 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ATP6AP1LQ52LC2 224 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 PIK3R6Q5UE93 754 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 FAM117BQ6P1L5 589 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ZNF549Q6P9A3 640 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ENPP6Q6UWR7 440 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 SLCO6A1Q86UG4 719 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ZNF280BQ86YH2 543 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 AQP12AQ8IXF9 295 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 DCP1BQ8IZD4 617 aaKnown RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 MFSD2AQ8NA29 543 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 CNIH3Q8TBE1 160 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 FRS2Q8WU20 508 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 TADA1Q96BN2 335 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 UBXN10Q96LJ8 280 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 FUNDC2Q9BWH2 189 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 ZFP14Q9HCL3 533 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 FNIP2Q9P278 1114 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 PCDHB3Q9Y5E6 796 aa12.3□□□□□ -0.44
HDAC4-208ENST00000463007 OAS3Q9Y6K5 1087 aaKnown RBP12.3□□□□□ -0.44
HDAC4-208ENST00000463007 USP34Q70CQ2 3546 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 CCDC162PA2VCL2 907 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 KRBA1A5PL33 1030 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 PSMD3O43242 534 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 SLC22A3O75751 556 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 ESRRBO95718 433 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 GLP2RO95838 553 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 GUCA1CO95843 209 aa12.29□□□□□ -0.44
HDAC4-208ENST00000463007 DNAJB1P25685 340 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms