RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CAPNS1P04632 268 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 RALBP11234 206 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 SESN2P58004 480 aaPredicted RBP18.38■□□□□ 0.53
USP39-209ENST00000458268 CCDC173Q0VFZ6 552 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 SEMA5AQ13591 1074 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 NFE2L1Q14494 772 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 RAB11FIP2Q7L804 512 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 SNX20Q7Z614 316 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 AMZ2Q86W34 360 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 FBXO39Q8N4B4 442 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 PRELID2Q8N945 189 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 RCBTB1Q8NDN9 531 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 MAGOHBQ96A72 148 aaKnown RBP18.38■□□□□ 0.53
USP39-209ENST00000458268 CXorf40BQ96DE9 158 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 NLE1Q9NVX2 485 aaPredicted RBP18.38■□□□□ 0.53
USP39-209ENST00000458268 CPNE7Q9UBL6 633 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 KLHL3Q9UH77 587 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 DRG1Q9Y295 367 aaKnown RBP18.38■□□□□ 0.53
USP39-209ENST00000458268 ZKSCAN5Q9Y2L8 839 aa18.38■□□□□ 0.53
USP39-209ENST00000458268 IGHV1OR21-1A0A087WYE8 117 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 KIR2DS5A0A0G2JLQ3 304 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 A0A0G2JNG1 304 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 A0A1W2PNU3 283 aaPredicted RBP18.37■□□□□ 0.53
USP39-209ENST00000458268 CFAP99D6REC4 459 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 KIR2DS3K7RE56 304 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 PGRMC1O00264 195 aaKnown RBP18.37■□□□□ 0.53
USP39-209ENST00000458268 TNFSF15O95150 251 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 JMJD7P0C870 316 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 HALP42357 657 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 LSSP48449 732 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 MAPK10P53779 464 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 KIR2DS5Q14953 304 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 ZNF438Q7Z4V0 828 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 NXPE1Q8N323 547 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 OR10G6Q8NH81 332 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 COG1Q8WTW3 980 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 STYXQ8WUJ0 223 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 NCSTNQ92542 709 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 CCDC74BQ96LY2 380 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 OSBPL9Q96SU4 736 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 COPS8Q99627 209 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 TBC1D10AQ9BXI6 508 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 HOMER3Q9NSC5 361 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 SMOXQ9NWM0 555 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 TMEM9Q9P0T7 183 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 PYCARDQ9ULZ3 195 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 LOXL2Q9Y4K0 774 aa18.37■□□□□ 0.53
USP39-209ENST00000458268 PRAMEF33A0A0G2JMD5 474 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 A6NCN8 305 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 OR5K4A6NMS3 321 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 A8MU76 341 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 PLD2O14939 933 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 DUX1O43812 170 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 POLBP06746 335 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 ITIH1P19827 911 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 CD1CP29017 333 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 CSF2RBP32927 897 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 GPR3P46089 330 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 FASLGP48023 281 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 ARSDP51689 593 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 CLCNKAP51800 687 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 SKIDA1Q1XH10 827 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 TBC1D25Q3MII6 688 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.36■□□□□ 0.53
USP39-209ENST00000458268 DRICH1Q6PGQ1 229 aaPredicted RBP18.36■□□□□ 0.53
USP39-209ENST00000458268 LRRC69Q6ZNQ3 347 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 FAM83HQ6ZRV2 1179 aaPredicted RBP18.36■□□□□ 0.53
USP39-209ENST00000458268 C11orf96Q7Z7L8 435 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 SERPINA9Q86WD7 417 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 PPHLN1Q8NEY8 458 aaKnown RBP18.36■□□□□ 0.53
USP39-209ENST00000458268 DTX3LQ8TDB6 740 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 JPH3Q8WXH2 748 aaPredicted RBP18.36■□□□□ 0.53
USP39-209ENST00000458268 SH3KBP1Q96B97 665 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 CDKN2AIPNLQ96HQ2 116 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 PDLIM2Q96JY6 352 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 SARS2Q9NP81 518 aaKnown RBP18.36■□□□□ 0.53
USP39-209ENST00000458268 DKK4Q9UBT3 224 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 SLC2A6Q9UGQ3 507 aa18.36■□□□□ 0.53
USP39-209ENST00000458268 CFAP20Q9Y6A4 193 aaKnown RBP18.36■□□□□ 0.53
USP39-209ENST00000458268 URB1O60287 2271 aaKnown RBP18.35■□□□□ 0.53
USP39-209ENST00000458268 HEATR9A2RTY3 570 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 TMX2-CTNND1H3BSU7 103 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 ZNF185O15231 689 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 KRT14P02533 472 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 HOXB3P14651 431 aaPredicted RBP18.35■□□□□ 0.53
USP39-209ENST00000458268 TYRP1P17643 537 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 GNG11P61952 73 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 CRADDP78560 199 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 GPS1Q13098 491 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 TTC27Q6P3X3 843 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 LSMEM2Q8N112 164 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 RASGEF1CQ8N431 466 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 OR6P1Q8NGX9 317 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 FGF11Q92914 225 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 GRAMD1AQ96CP6 724 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 LIN37Q96GY3 246 aaPredicted RBP18.35■□□□□ 0.53
USP39-209ENST00000458268 CAPZA3Q96KX2 299 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 NAP1L3Q99457 506 aaPredicted RBP18.35■□□□□ 0.53
USP39-209ENST00000458268 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.35■□□□□ 0.53
USP39-209ENST00000458268 CASS4Q9NQ75 786 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms