RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 KIR2DS5Q14953 304 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 GPR33Q49SQ1 333 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.07■□□□□ 0.32
USP39-208ENST00000455732 WASH2PQ6VEQ5 465 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 PPP1R21Q6ZMI0 780 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 RASGEF1AQ8N9B8 481 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 Q8N9G6 341 aaPredicted RBP17.07■□□□□ 0.32
USP39-208ENST00000455732 AVL9Q8NBF6 648 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 LIN37Q96GY3 246 aaPredicted RBP17.07■□□□□ 0.32
USP39-208ENST00000455732 ZNF578Q96N58 590 aaPredicted RBP17.07■□□□□ 0.32
USP39-208ENST00000455732 SLC46A1Q96NT5 459 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 DCBLD2Q96PD2 775 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 SARS2Q9NP81 518 aaKnown RBP17.07■□□□□ 0.32
USP39-208ENST00000455732 WASH6PQ9NQA3 447 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 DNMT3AQ9Y6K1 912 aaPredicted RBP17.07■□□□□ 0.32
USP39-208ENST00000455732 AHCTF1Q8WYP5 2266 aa17.07■□□□□ 0.32
USP39-208ENST00000455732 FASNP49327 2511 aaKnown RBP17.06■□□□□ 0.32
USP39-208ENST00000455732 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.06■□□□□ 0.32
USP39-208ENST00000455732 CCDC187A0A096LP49 1063 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 HEATR9A2RTY3 570 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 PMS2P1A4D2B8 440 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 PPM1DO15297 605 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 B4GAT1O43505 415 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 VCLP18206 1134 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 MSH3P20585 1137 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 CCKBRP32239 447 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 MC4RP32245 332 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 GRIA1P42261 906 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 CTSCP53634 463 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 TMPRSS15P98073 1019 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 CDK16Q00536 496 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 ZFP36L1Q07352 338 aaKnown RBP17.06■□□□□ 0.32
USP39-208ENST00000455732 PLA2G4EQ3MJ16 856 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 AGAP9Q5VTM2 703 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 TTC27Q6P3X3 843 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 TMPRSS9Q7Z410 1059 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 NXPE1Q8N323 547 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 WDR36Q8NI36 951 aaKnown RBP17.06■□□□□ 0.32
USP39-208ENST00000455732 HEXDCQ8WVB3 486 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 PEX13Q92968 403 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 MAGOHBQ96A72 148 aaKnown RBP17.06■□□□□ 0.32
USP39-208ENST00000455732 CDKN2AIPNLQ96HQ2 116 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 FOXP3Q9BZS1 431 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 CRLS1Q9UJA2 301 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 ATXN7L1Q9ULK2 861 aaPredicted RBP17.06■□□□□ 0.32
USP39-208ENST00000455732 SLC30A1Q9Y6M5 507 aa17.06■□□□□ 0.32
USP39-208ENST00000455732 SMG1Q96Q15 3661 aaKnown RBP17.06■□□□□ 0.32
USP39-208ENST00000455732 IGLV3-16A0A075B6K0 115 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 KLHL33A6NCF5 533 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 TMX2-CTNND1H3BSU7 103 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 AP3B1O00203 1094 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 SNX2O60749 519 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 TCP1P17987 556 aaKnown RBP17.05■□□□□ 0.32
USP39-208ENST00000455732 TPSB2P20231 275 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 ITPKBP27987 946 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 AKT1P31749 480 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 MAGEA6P43360 314 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 INHBCP55103 352 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 BASP1P80723 227 aaKnown RBP17.05■□□□□ 0.32
USP39-208ENST00000455732 ACVR1Q04771 509 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 BIRC2Q13490 618 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 SQSTM1Q13501 440 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 TPSAB1Q15661 275 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 SKIDA1Q1XH10 827 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 BCL7AQ4VC05 210 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 ABRAXAS1Q6UWZ7 409 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 SLC9B2Q86UD5 537 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 TMEM74Q96NL1 305 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 AP1M1Q9BXS5 423 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 OSGEPL1Q9H4B0 414 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 STN1Q9H668 368 aaKnown RBP17.05■□□□□ 0.32
USP39-208ENST00000455732 PRDM8Q9NQV8 689 aa17.05■□□□□ 0.32
USP39-208ENST00000455732 GOLGA6L10A0A0M3HER8 536 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 CDRT15L2A8MXV6 281 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 CCL22O00626 93 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 PHF2O75151 1096 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 RALBP11234 206 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 IDSP22304 550 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 ADRA1DP25100 572 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 ACRV1P26436 265 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 COILP38432 576 aaPredicted RBP17.04■□□□□ 0.32
USP39-208ENST00000455732 MLLT3P42568 568 aaPredicted RBP17.04■□□□□ 0.32
USP39-208ENST00000455732 FNTAP49354 379 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 OR1D5P58170 312 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 UBE2IP63279 158 aaKnown RBP17.04■□□□□ 0.32
USP39-208ENST00000455732 GPLD1P80108 840 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 HHEXQ03014 270 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 CACNG1Q06432 222 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 EIF3IQ13347 325 aaKnown RBP17.04■□□□□ 0.32
USP39-208ENST00000455732 CCDC38Q502W7 563 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 TMEM220Q6QAJ8 160 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 NLRP9Q7RTR0 991 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 AMZ2Q86W34 360 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 SLITRK4Q8IW52 837 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 OR13J1Q8NGT2 312 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 SH3KBP1Q96B97 665 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 DCUN1D1Q96GG9 259 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 LINC00615Q96LM1 132 aaPredicted RBP17.04■□□□□ 0.32
USP39-208ENST00000455732 COPS8Q99627 209 aa17.04■□□□□ 0.32
USP39-208ENST00000455732 UCK1Q9HA47 277 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms