RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 R3HDM2Q9Y2K5 976 aaKnown RBP20.89■□□□□ 0.93
HMGB3-205ENST00000455596 LILRA5A6NI73 299 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 PRR19A6NJB7 356 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 ARHGAP6O43182 974 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 KCNJ13O60928 360 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 VIPP01282 170 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 CCL4P13236 92 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 CSTF2P33240 577 aaKnown RBP eCLIP20.88■□□□□ 0.93
HMGB3-205ENST00000455596 MAPK9P45984 424 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 SPARCL1Q14515 664 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 GPRC6AQ5T6X5 926 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 ABRAXAS1Q6UWZ7 409 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 WASH2PQ6VEQ5 465 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 KLHDC8BQ8IXV7 354 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 RASGEF1AQ8N9B8 481 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 CCDC112Q8NEF3 446 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 SLC35B2Q8TB61 432 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 NCSTNQ92542 709 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 TMEM121Q9BTD3 319 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 UCK1Q9HA47 277 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 ARNT2Q9HBZ2 717 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 WASH6PQ9NQA3 447 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 WDR70Q9NW82 654 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 PDP2Q9P2J9 529 aa20.88■□□□□ 0.93
HMGB3-205ENST00000455596 SDK2Q58EX2 2172 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 TCRBV7S2A1N4TA0A589 114 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 C9orf172C9J069 976 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 SRP72O76094 671 aaKnown RBP20.87■□□□□ 0.93
HMGB3-205ENST00000455596 LIPCP11150 499 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 MSH3P20585 1137 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 RPL10P27635 214 aaKnown RBP20.87■□□□□ 0.93
HMGB3-205ENST00000455596 CD82P27701 267 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 AKT1P31749 480 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 CA5AP35218 305 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 SLC19A1P41440 591 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 GDF10P55107 478 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 VAC14Q08AM6 782 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 MSLNQ13421 630 aaPredicted RBP20.87■□□□□ 0.93
HMGB3-205ENST00000455596 P3H1Q32P28 736 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 ARHGAP40Q5TG30 622 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 AGAP9Q5VTM2 703 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 DENND5AQ6IQ26 1287 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 TAAR9Q96RI9 348 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 TBC1D10AQ9BXI6 508 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 ASB8Q9H765 288 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 POT1Q9NUX5 634 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 FOXJ2Q9P0K8 574 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 ZNF624Q9P2J8 865 aaPredicted RBP20.87■□□□□ 0.93
HMGB3-205ENST00000455596 FKBPLQ9UIM3 349 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 KCTD3Q9Y597 815 aa20.87■□□□□ 0.93
HMGB3-205ENST00000455596 DNMT3AQ9Y6K1 912 aaPredicted RBP20.87■□□□□ 0.93
HMGB3-205ENST00000455596 NBEAQ8NFP9 2946 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 OR2AG2A6NM03 316 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 METTL18O95568 372 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 FGF3P11487 239 aaPredicted RBP20.86■□□□□ 0.93
HMGB3-205ENST00000455596 BRAFP15056 766 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 HADHAP40939 763 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 CTSCP53634 463 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 DRG2P55039 364 aaKnown RBP20.86■□□□□ 0.93
HMGB3-205ENST00000455596 DMPKQ09013 629 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 SNAP47Q5SQN1 464 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 KCTD11Q693B1 232 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 TMEM220Q6QAJ8 160 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 CCDC81Q6ZN84 652 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 TMEM26Q6ZUK4 368 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 AMZ2Q86W34 360 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 OR13C4Q8NGS5 318 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 BBC3Q96PG8 261 aaPredicted RBP20.86■□□□□ 0.93
HMGB3-205ENST00000455596 CCNL2Q96S94 520 aaPredicted RBP20.86■□□□□ 0.93
HMGB3-205ENST00000455596 C19orf43Q9BQ61 176 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 LRRC40Q9H9A6 602 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 ZFYVE26Q68DK2 2539 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 CACNA1GO43497 2377 aa20.86■□□□□ 0.93
HMGB3-205ENST00000455596 A8MU76 341 aa20.85■□□□□ 0.93
HMGB3-205ENST00000455596 PSMD3O43242 534 aa20.85■□□□□ 0.93
HMGB3-205ENST00000455596 POP7O75817 140 aaKnown RBP20.85■□□□□ 0.93
HMGB3-205ENST00000455596 HALP42357 657 aa20.85■□□□□ 0.93
HMGB3-205ENST00000455596 ZNF140P52738 457 aaPredicted RBP20.85■□□□□ 0.93
HMGB3-205ENST00000455596 LONRF2Q1L5Z9 754 aa20.85■□□□□ 0.93
HMGB3-205ENST00000455596 ZFAND4Q86XD8 727 aa20.85■□□□□ 0.93
HMGB3-205ENST00000455596 CXorf40BQ96DE9 158 aa20.85■□□□□ 0.93
HMGB3-205ENST00000455596 ZNF514Q96K75 400 aaPredicted RBP20.85■□□□□ 0.93
HMGB3-205ENST00000455596 PIKFYVEQ9Y2I7 2098 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 OR52A4PA6NMU1 304 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 EIF4E1BA6NMX2 242 aaKnown RBP20.84■□□□□ 0.93
HMGB3-205ENST00000455596 K7ENP7 123 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 PBLDP30039 288 aaPredicted RBP20.84■□□□□ 0.93
HMGB3-205ENST00000455596 TMPRSS15P98073 1019 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 XIAPP98170 497 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 TGIF1Q15583 401 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 FNBP1LQ5T0N5 605 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 INO80CQ6PI98 192 aaPredicted RBP20.84■□□□□ 0.93
HMGB3-205ENST00000455596 ARHGAP22Q7Z5H3 698 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 FAM129CQ86XR2 697 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 PLXDC1Q8IUK5 500 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 RBM12BQ8IXT5 1001 aaKnown RBP20.84■□□□□ 0.93
HMGB3-205ENST00000455596 SNRNP27Q8WVK2 155 aaKnown RBP20.84■□□□□ 0.93
HMGB3-205ENST00000455596 ATG4AQ8WYN0 398 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 ART4Q93070 314 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 FRMD8P1Q9BZ68 369 aaPredicted RBP20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms