RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 LEFTY1O75610 366 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 DGKAP23743 735 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 SOX11P35716 441 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 GDF5P43026 501 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 ACTR3P61158 418 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 STX5Q13190 355 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 MAPRE2Q15555 327 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 LRRC74BQ6ZQY2 392 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 NXPE1Q8N323 547 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 FBXW8Q8N3Y1 598 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 ZBTB2Q8N680 514 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 SCRN2Q96FV2 425 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 SLC45A3Q96JT2 553 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 EBF3Q9H4W6 596 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 NSUN3Q9H649 340 aaKnown RBP13.5□□□□□ -0.25
CLK3-203ENST00000454830 MEAF6Q9HAF1 191 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 ZDHHC4Q9NPG8 344 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 HS3ST2Q9Y278 367 aa13.5□□□□□ -0.25
CLK3-203ENST00000454830 ACRV1P26436 265 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 HMOX2P30519 316 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 DGKGP49619 791 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 FLOT2Q14254 428 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 PTK2BQ14289 1009 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 GRB7Q14451 532 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 TTLL9Q3SXZ7 439 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 GPRIN3Q6ZVF9 776 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 KIRREL3Q8IZU9 778 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 HEPHQ9BQS7 1158 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 ERVW-1Q9UQF0 538 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 LZTS1Q9Y250 596 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 SLC9A3R1O14745 358 aaPredicted RBP13.49□□□□□ -0.25
CLK3-203ENST00000454830 MAP3K7O43318 606 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 VHLP40337 213 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 NRIP1P48552 1158 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 SPATA24Q86W54 205 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 ASB1Q9Y576 335 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 MRASO14807 208 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 FFAR3O14843 346 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 GPR42O15529 346 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 HSPA1AP0DMV8 641 aaKnown RBP13.49□□□□□ -0.25
CLK3-203ENST00000454830 HSPA1BP0DMV9 641 aaKnown RBP13.49□□□□□ -0.25
CLK3-203ENST00000454830 LHCGRP22888 699 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 HK3P52790 923 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 CLNS1AP54105 237 aaKnown RBP13.49□□□□□ -0.25
CLK3-203ENST00000454830 NFKB2Q00653 900 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 SATB1Q01826 763 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 Q6ZVL8 140 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 GET4Q7L5D6 327 aaPredicted RBP13.49□□□□□ -0.25
CLK3-203ENST00000454830 OR52B6Q8NGF0 335 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 DNAJC9Q8WXX5 260 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 ULK4Q96C45 1275 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 EBF2Q9HAK2 575 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 PPM1HQ9ULR3 514 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 RWDD3Q9Y3V2 267 aa13.49□□□□□ -0.25
CLK3-203ENST00000454830 GOLGA4Q13439 2230 aaKnown RBP13.48□□□□□ -0.25
CLK3-203ENST00000454830 FFAR2O15552 330 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 SNRPB2P08579 225 aaKnown RBP13.48□□□□□ -0.25
CLK3-203ENST00000454830 ANPEPP15144 967 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 LBPP18428 481 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 CLCN7P51798 805 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 THOP1P52888 689 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 DHCR24Q15392 516 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 TXNDC11Q6PKC3 985 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 SYVN1Q86TM6 617 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 PKD2L2Q9NZM6 624 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 CLGNO14967 610 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 ANGPT2O15123 496 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 TSPAN12O95859 305 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 HLA-EP13747 358 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 IL27RAQ6UWB1 636 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 MBOAT1Q6ZNC8 495 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 AHI1Q8N157 1196 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 OR2A12Q8NGT7 310 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 PIKFYVEQ9Y2I7 2098 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 OR2AG2A6NM03 316 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 MLYCDO95822 493 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 ADH5P11766 374 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 CSNK1DP48730 415 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 CCNG1P51959 295 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 CAMK1Q14012 370 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 CRY1Q16526 586 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 FNDC3BQ53EP0 1204 aaKnown RBP13.48□□□□□ -0.25
CLK3-203ENST00000454830 ZNF648Q5T619 568 aaPredicted RBP13.48□□□□□ -0.25
CLK3-203ENST00000454830 ADGRD2Q7Z7M1 963 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 ENDOVQ8N8Q3 282 aaKnown RBP13.48□□□□□ -0.25
CLK3-203ENST00000454830 HERVK_113Q902F9 699 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 N4BP2L2Q92802 583 aaPredicted RBP13.48□□□□□ -0.25
CLK3-203ENST00000454830 SLC39A3Q9BRY0 314 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 WRAP53Q9BUR4 548 aaKnown RBP13.48□□□□□ -0.25
CLK3-203ENST00000454830 P2RY12Q9H244 342 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 PFDN4Q9NQP4 134 aa13.48□□□□□ -0.25
CLK3-203ENST00000454830 STX18Q9P2W9 335 aaKnown RBP13.48□□□□□ -0.25
CLK3-203ENST00000454830 PENKP01210 267 aaPredicted RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 HNRNPA1P09651 372 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLK3-203ENST00000454830 NSG1P42857 185 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 PSME3P61289 254 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 PLIN5Q00G26 463 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 PTSQ03393 145 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 GALNT1Q10472 559 aaPredicted RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 RALGDSQ12967 914 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms