RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 RBP3P10745 1247 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 CTSCP53634 463 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 GEMP55040 296 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 RWDD2BP57060 319 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 EIF3EP60228 445 aaKnown RBP20.41■□□□□ 0.86
SDC1-205ENST00000447124 CLCA4Q14CN2 919 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 SEPT7Q16181 437 aaKnown RBP20.41■□□□□ 0.86
SDC1-205ENST00000447124 ANKRD20A2Q5SQ80 823 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 CCDC181Q5TID7 509 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 ANKRD20A1Q5TYW2 823 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 ANKRD20A3Q5VUR7 823 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 ANKS6Q68DC2 871 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 WASH2PQ6VEQ5 465 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 GLT6D1Q7Z4J2 308 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 FAM129CQ86XR2 697 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 TMEM139Q8IV31 216 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 GDAP1Q8TB36 358 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 BRSK1Q8TDC3 778 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 APOL2Q9BQE5 337 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 DDA1Q9BW61 102 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 WASH6PQ9NQA3 447 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 KLHL3Q9UH77 587 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 KCTD3Q9Y597 815 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 ARL5AQ9Y689 179 aa20.41■□□□□ 0.86
SDC1-205ENST00000447124 GLYATL1P3A0A0U1RQE8 302 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 CCDC66A2RUB6 948 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 PDZK1P1A8MUH7 402 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 STMND1H3BQB6 276 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 POP7O75817 140 aaKnown RBP20.4■□□□□ 0.86
SDC1-205ENST00000447124 VIPP01282 170 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 TYRP1P17643 537 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 VAV2P52735 878 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 DRG2P55039 364 aaKnown RBP20.4■□□□□ 0.86
SDC1-205ENST00000447124 GFERP55789 205 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 MC2RQ01718 297 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 ZDHHC20Q5W0Z9 365 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 TMEM220Q6QAJ8 160 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 EXD3Q8N9H8 876 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 GCN1Q92616 2671 aaKnown RBP20.4■□□□□ 0.86
SDC1-205ENST00000447124 CTRCQ99895 268 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 ZMYND15Q9H091 742 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 PCDHGA4Q9Y5G9 962 aa20.4■□□□□ 0.86
SDC1-205ENST00000447124 OR52A4PA6NMU1 304 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 ANXA9O76027 345 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 IDSP22304 550 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 PSMB4P28070 264 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 TNNT3P45378 269 aaPredicted RBP20.39■□□□□ 0.85
SDC1-205ENST00000447124 CYP4F2P78329 520 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 GPRC6AQ5T6X5 926 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 AGAP9Q5VTM2 703 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 DARS2Q6PI48 645 aaKnown RBP20.39■□□□□ 0.85
SDC1-205ENST00000447124 FAM83HQ6ZRV2 1179 aaPredicted RBP20.39■□□□□ 0.85
SDC1-205ENST00000447124 TRAPPC5Q8IUR0 188 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 AVL9Q8NBF6 648 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 DDHD1Q8NEL9 900 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 CCDC110Q8TBZ0 833 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 ZNF398Q8TD17 642 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 RTP4Q96DX8 246 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 FSD1LQ9BXM9 530 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 EPB41L1Q9H4G0 881 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 APMAPQ9HDC9 416 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 SLC40A1Q9NP59 571 aa20.39■□□□□ 0.85
SDC1-205ENST00000447124 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.39■□□□□ 0.85
SDC1-205ENST00000447124 STX7O15400 261 aaKnown RBP20.38■□□□□ 0.85
SDC1-205ENST00000447124 KCNN4O15554 427 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 C9P02748 559 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 GTF2H3Q13889 308 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 LDLRAP1Q5SW96 308 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 DCAF12Q5T6F0 453 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 ITPRIPL1Q6GPH6 555 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 DENND5AQ6IQ26 1287 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 CDKL3Q8IVW4 592 aaPredicted RBP20.38■□□□□ 0.85
SDC1-205ENST00000447124 CCDC112Q8NEF3 446 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 OR4K2Q8NGD2 314 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 NAT14Q8WUY8 206 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 TTC25Q96NG3 672 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 BAG1Q99933 345 aaPredicted RBP20.38■□□□□ 0.85
SDC1-205ENST00000447124 ASPSCR1Q9BZE9 553 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 FBXO8Q9NRD0 319 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 PKP3Q9Y446 797 aa20.38■□□□□ 0.85
SDC1-205ENST00000447124 MN1Q10571 1320 aaPredicted RBP20.37■□□□□ 0.85
SDC1-205ENST00000447124 MACROD2A1Z1Q3 448 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 KCNJ13O60928 360 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 PPFIA2O75334 1257 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 UBXN7O94888 489 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 IPO7O95373 1038 aaKnown RBP20.37■□□□□ 0.85
SDC1-205ENST00000447124 LPOP22079 712 aaPredicted RBP20.37■□□□□ 0.85
SDC1-205ENST00000447124 LEPRP48357 1165 aaKnown RBP20.37■□□□□ 0.85
SDC1-205ENST00000447124 SPARCL1Q14515 664 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 TAF1AQ15573 450 aaPredicted RBP20.37■□□□□ 0.85
SDC1-205ENST00000447124 TIPARPQ7Z3E1 657 aaKnown RBP20.37■□□□□ 0.85
SDC1-205ENST00000447124 AMZ2Q86W34 360 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 PLXDC1Q8IUK5 500 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 TRIM48Q8IWZ4 208 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 EXTL1Q92935 676 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 C9orf72Q96LT7 481 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 SPATA13Q96N96 652 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 SMOXQ9NWM0 555 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 FKBPLQ9UIM3 349 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 PILRAQ9UKJ1 303 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms