RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 DHRS7Q9Y394 339 aa15.83■□□□□ 0.12
SHQ1-202ENST00000444040 PCDHB9Q9Y5E1 797 aa15.83■□□□□ 0.12
SHQ1-202ENST00000444040 ARHGAP10A1A4S6 786 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 H6PDO95479 791 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 PSMA4P25789 261 aaKnown RBP15.82■□□□□ 0.12
SHQ1-202ENST00000444040 POLR2JP52435 117 aaKnown RBP15.82■□□□□ 0.12
SHQ1-202ENST00000444040 TWF1Q12792 350 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 DYNC1I2Q13409 638 aaKnown RBP15.82■□□□□ 0.12
SHQ1-202ENST00000444040 LETMD1Q6P1Q0 360 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 LRRC43Q8N309 656 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 PACRGLQ8N7B6 248 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 MFSD2AQ8NA29 543 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 PROKR1Q8TCW9 393 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 HHIPL1Q96JK4 782 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 NUDT4Q9NZJ9 180 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 ZIM2Q9NZV7 527 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 ZNF711Q9Y462 761 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 OR51B4Q9Y5P0 310 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 TCRBV5S2A0A599 114 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 CCDC154A6NI56 674 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 SAC3D1A6NKF1 404 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 GIPC1O14908 333 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 ABLIM3O94929 683 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 IL10P22301 178 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 HMGCLP35914 325 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 CACNG1Q06432 222 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 BORAQ6PGQ7 559 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 CMTR2Q8IYT2 770 aaKnown RBP15.82■□□□□ 0.12
SHQ1-202ENST00000444040 STK40Q8N2I9 435 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 RAET1EQ8TD07 263 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 CCDC97Q96F63 343 aaPredicted RBP15.82■□□□□ 0.12
SHQ1-202ENST00000444040 FEM1AQ9BSK4 669 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 MUC13Q9H3R2 512 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 PFDN4Q9NQP4 134 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 RIC8BQ9NVN3 520 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 PTTG2Q9NZH5 202 aa15.82■□□□□ 0.12
SHQ1-202ENST00000444040 LEF1Q9UJU2 399 aaPredicted RBP15.82■□□□□ 0.12
SHQ1-202ENST00000444040 FAM149AA5PLN7 773 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 H3BNH8 94 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 MTHFD1P11586 935 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 LIPEQ05469 1076 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 PCBP2Q15366 365 aaKnown RBP eCLIP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 ADRM1Q16186 407 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 SBSNQ6UWP8 590 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 CBR4Q8N4T8 237 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 TSPAN14Q8NG11 270 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 ZNF461Q8TAF7 563 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 MAGEE1Q9HCI5 957 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 PNPLA3Q9NST1 481 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 TMEM45AQ9NWC5 275 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 FCF1Q9Y324 198 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 PKP3Q9Y446 797 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 TYW5A2RUC4 315 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 H0Y626 953 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 PRMT5O14744 637 aaPredicted RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 SYNCRIPO60506 623 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 INHAP05111 366 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 GPIP06744 558 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 FASP25445 335 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 HOXD10P28358 340 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 ALDH7A1P49419 539 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 CCT8P50990 548 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 PLD1Q13393 1074 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 C18orf21Q32NC0 220 aaPredicted RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 ATXN7L2Q5T6C5 722 aaPredicted RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 LYSMD3Q7Z3D4 306 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 SFRP1Q8N474 314 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 CARNMT1Q8N4J0 409 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 FNDC5Q8NAU1 212 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 TRPV3Q8NET8 790 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 GRIN3AQ8TCU5 1115 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 TRMT2BQ96GJ1 504 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 SMPD4Q9NXE4 827 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 DNMT3BQ9UBC3 853 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 DMTF1Q9Y222 760 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 FAM234BA2RU67 622 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 TBL1XO60907 577 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 AOC2O75106 756 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 SPATA31D3P0C874 917 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 NELFEP18615 380 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 CA5AP35218 305 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 HTR6P50406 440 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 SH3BGRP55822 239 aaPredicted RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 RHOAP61586 193 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 TIGD2Q4W5G0 525 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 NANOGP8Q6NSW7 305 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 SPATA31D4Q6ZUB0 917 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 IFNEQ86WN2 208 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 CAMK1DQ8IU85 385 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 DIS3LQ8TF46 1054 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 PIH1D2Q8WWB5 315 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 ALG14Q96F25 216 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 TMEM74Q96NL1 305 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 NANOGQ9H9S0 305 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 INTS7Q9NVH2 962 aaKnown RBP15.81■□□□□ 0.12
SHQ1-202ENST00000444040 HSFX1Q9UBD0 423 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 VPS51Q9UID3 782 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 YIPF1Q9Y548 306 aa15.81■□□□□ 0.12
SHQ1-202ENST00000444040 SLC30A1Q9Y6M5 507 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms