RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 FDCSPQ8NFU4 85 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 CCHCR1Q8TD31 782 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 HSPH1Q92598 858 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 C19orf60Q96EN9 201 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 ZNF514Q96K75 400 aaPredicted RBP14.12□□□□□ -0.15
HMGN1-208ENST00000443046 TSGA13Q96PP4 275 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 SMAD5Q99717 465 aaKnown RBP14.12□□□□□ -0.15
HMGN1-208ENST00000443046 ZSCAN5AQ9BUG6 496 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 MLPHQ9BV36 600 aaPredicted RBP14.12□□□□□ -0.15
HMGN1-208ENST00000443046 NUDT9Q9BW91 350 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 SLAMF7Q9NQ25 335 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 RBM22Q9NW64 420 aaKnown RBP eCLIP14.12□□□□□ -0.153e-6■■□□□ 13.5
HMGN1-208ENST00000443046 LUZP4Q9P127 313 aa14.12□□□□□ -0.15
HMGN1-208ENST00000443046 PDZK1P1A8MUH7 402 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 CPNE3O75131 537 aaKnown RBP14.11□□□□□ -0.15
HMGN1-208ENST00000443046 EBLN1P0CF75 366 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 CA4P22748 312 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 CCNCP24863 283 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 RPL10P27635 214 aaKnown RBP14.11□□□□□ -0.15
HMGN1-208ENST00000443046 ZNF165P49910 485 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 UBXN1Q04323 297 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 GPS2Q13227 327 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 SEPT7Q16181 437 aaKnown RBP14.11□□□□□ -0.15
HMGN1-208ENST00000443046 INSCQ1MX18 579 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 PLA2G4EQ3MJ16 856 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 TDRD12Q587J7 1177 aaKnown RBP14.11□□□□□ -0.15
HMGN1-208ENST00000443046 ZNF569Q5MCW4 686 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 CRTC3Q6UUV7 619 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 CERS6Q6ZMG9 384 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 TRAM1L1Q8N609 369 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 PCSK5Q92824 1860 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 GLYATL1Q969I3 302 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 SNRNP40Q96DI7 357 aaKnown RBP14.11□□□□□ -0.15
HMGN1-208ENST00000443046 PCMTD1Q96MG8 357 aaPredicted RBP14.11□□□□□ -0.15
HMGN1-208ENST00000443046 LRFN5Q96NI6 719 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 BARD1Q99728 777 aaKnown RBP14.11□□□□□ -0.15
HMGN1-208ENST00000443046 SPATA16Q9BXB7 569 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 MFRPQ9BY79 579 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 FGF21Q9NSA1 209 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 MYO6Q9UM54 1294 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 SLC5A6Q9Y289 635 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 DNAJC16Q9Y2G8 782 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 WDR37Q9Y2I8 494 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 SCINQ9Y6U3 715 aa14.11□□□□□ -0.15
HMGN1-208ENST00000443046 MFSD11O43934 449 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 TMEM63AO94886 807 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 HLA-DQB2P05538 268 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 RAB40ALP0C0E4 278 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 IDSP22304 550 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 FECHP22830 423 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 ELAVL4P26378 380 aaKnown RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 DRG2P55039 364 aaKnown RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 ITGA1P56199 1179 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 TUBB4BP68371 445 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 SLC25A11Q02978 314 aaKnown RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 TUBB2AQ13885 445 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 PAFAH1B3Q15102 231 aaKnown RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 NR6A1Q15406 480 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 KHDC1Q4VXA5 237 aaKnown RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 CRB2Q5IJ48 1285 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 LCN10Q6JVE6 187 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 TIGD7Q6NT04 549 aaPredicted RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 TMC3Q7Z5M5 1100 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 ZNF501Q96CX3 271 aaPredicted RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 CXorf40BQ96DE9 158 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 MAP3K3Q99759 626 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 TUBB2BQ9BVA1 445 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 NUP85Q9BW27 656 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 MRPL47Q9HD33 250 aaKnown RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 TMPRSS11EQ9UL52 423 aa14.1□□□□□ -0.15
HMGN1-208ENST00000443046 DIDO1Q9BTC0 2240 aaKnown RBP14.1□□□□□ -0.15
HMGN1-208ENST00000443046 DDX3XO00571 662 aaKnown RBP eCLIP14.09□□□□□ -0.155e-16■■■■□ 25.2
HMGN1-208ENST00000443046 KRT86O43790 486 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 VEGFDO43915 354 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 SCRG1O75711 98 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 CAPN1P07384 714 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 CD48P09326 243 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 ARSEP51690 589 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 HSD11B2P80365 405 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 PDE1BQ01064 536 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 MMRN1Q13201 1228 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 IFI16Q16666 785 aaKnown RBP14.09□□□□□ -0.15
HMGN1-208ENST00000443046 PLEKHN1Q494U1 663 aaPredicted RBP14.09□□□□□ -0.15
HMGN1-208ENST00000443046 ZRANB3Q5FWF4 1079 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 PLEKHS1Q5SXH7 462 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 NCBP2-AS2Q69YL0 99 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 MED25Q71SY5 747 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 ZNF571Q7Z3V5 609 aaPredicted RBP14.09□□□□□ -0.15
HMGN1-208ENST00000443046 SLC34A3Q8N130 599 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 NIPA2Q8N8Q9 360 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 TMEM102Q8N9M5 508 aaPredicted RBP14.09□□□□□ -0.15
HMGN1-208ENST00000443046 OR8K5Q8NH50 307 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 MR1Q95460 341 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 ZNF653Q96CK0 615 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 C5orf34Q96MH7 638 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 TRIB3Q96RU7 358 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 RANBP9Q96S59 729 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 CD180Q99467 661 aa14.09□□□□□ -0.15
HMGN1-208ENST00000443046 NUP62CLQ9H1M0 184 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms