RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.03■□□□□ 0.32
PTPRF-209ENST00000438120 IKZF2Q9UKS7 526 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 MROH1Q8NDA8 1641 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 BBIP1A8MTZ0 92 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 CDH3P22223 829 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 RPL5P46777 297 aaKnown RBP17.03■□□□□ 0.32
PTPRF-209ENST00000438120 SLC10A6Q3KNW5 377 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 ZYG11AQ6WRX3 759 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 IKBIPQ70UQ0 350 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 NRSN1Q8IZ57 195 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 TCAIMQ8N3R3 496 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 EIF2B4Q9UI10 523 aaKnown RBP17.03■□□□□ 0.32
PTPRF-209ENST00000438120 TTC24A2A3L6 582 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-209ENST00000438120 CAPN8A6NHC0 703 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 GSC2O15499 205 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 TTKP33981 857 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 NEK5Q6P3R8 708 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 TMEM220Q6QAJ8 160 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 PAOXQ6QHF9 649 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 CLNKQ7Z7G1 428 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 C1GALT1C1Q96EU7 318 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 GAS2L1Q99501 681 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-209ENST00000438120 MIOSQ9NXC5 875 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 UBAP1Q9NZ09 502 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 RSL24D1Q9UHA3 163 aaKnown RBP17.03■□□□□ 0.32
PTPRF-209ENST00000438120 NR2F6P10588 404 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 CHIT1Q13231 466 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 FAM91A1Q658Y4 838 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 COMMD9Q9P000 198 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 ARL5AQ9Y689 179 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 HAT1O14929 419 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 F7P08709 466 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-209ENST00000438120 CYP3A5P20815 502 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 NDUFA5Q16718 116 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 PQLC1Q8N2U9 271 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 LIX1Q8N485 282 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 FZD10Q9ULW2 581 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 CASKO14936 926 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 CHRNB2P17787 502 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 YBEYP58557 167 aaPredicted RBP17.02■□□□□ 0.32
PTPRF-209ENST00000438120 CCL14Q16627 93 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 REP15Q6BDI9 236 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 ZNF781Q8N8C0 355 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 FBXO22Q8NEZ5 403 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 DBF4BQ8NFT6 615 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 OR10H5Q8NGA6 315 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 BCAS3Q9H6U6 928 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 PRDM8Q9NQV8 689 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 ZNF214Q9UL59 606 aaPredicted RBP17.02■□□□□ 0.32
PTPRF-209ENST00000438120 UBE2QL1A1L167 161 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 TBX18O95935 607 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 CAP1Q01518 475 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 QPRTQ15274 297 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 GPR65Q8IYL9 337 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 ABCB8Q9NUT2 735 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 CDH22Q9UJ99 828 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 INHAP05111 366 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 GIMD1P0DJR0 217 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 NCK1P16333 377 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 LIMK2P53671 638 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 MAPK12P53778 367 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 DAOAP59103 153 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 SNAPC1Q16533 368 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 C6orf52Q5T4I8 152 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 TSTD2Q5T7W7 516 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 CXorf57Q6NSI4 855 aaKnown RBP17.02■□□□□ 0.32
PTPRF-209ENST00000438120 RTL4Q6ZR62 310 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 JAZF1Q86VZ6 243 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 TMEM139Q8IV31 216 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 TMEM192Q8IY95 271 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 COLEC10Q9Y6Z7 277 aa17.02■□□□□ 0.32
PTPRF-209ENST00000438120 C2CD4BA6NLJ0 364 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 IFNGP01579 166 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 SUZ12Q15022 739 aaKnown RBP17.02■□□□□ 0.31
PTPRF-209ENST00000438120 GCNT6Q5T4J0 391 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 MSANTD2Q6P1R3 559 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 FOXR2Q6PJQ5 311 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 PIK3C3Q8NEB9 887 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 LPGAT1Q92604 370 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 CCDC177Q9NQR7 707 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-209ENST00000438120 L1CAMP32004 1257 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 SLC20A2Q08357 652 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 UBXN11Q5T124 520 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 DENND5AQ6IQ26 1287 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 MED27Q6P2C8 311 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 ECHDC2Q86YB7 292 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 JSRP1Q96MG2 331 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-209ENST00000438120 GAL3ST4Q96RP7 486 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 SYT17Q9BSW7 474 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 OXCT2Q9BYC2 517 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-209ENST00000438120 NEK6Q9HC98 313 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 ABCB9Q9NP78 766 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 HMGXB4Q9UGU5 601 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 FADS3Q9Y5Q0 445 aa17.02■□□□□ 0.31
PTPRF-209ENST00000438120 PTPN2P17706 415 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 ADGRD1Q6QNK2 874 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 TBC1D21Q8IYX1 336 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 CRYBG2Q8N1P7 616 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 UBR7Q8N806 425 aa17.01■□□□□ 0.31
PTPRF-209ENST00000438120 LCN9Q8WX39 176 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms