RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 WDR36Q8NI36 951 aaKnown RBP12.05□□□□□ -0.48
PTPRF-208ENST00000437607 GSDMBQ8TAX9 411 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 SIGLEC10Q96LC7 697 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 RANBP9Q96S59 729 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 ACBD3Q9H3P7 528 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 DKK3Q9UBP4 350 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 PHTF1Q9UMS5 762 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 ZNF711Q9Y462 761 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 A0A087WUV0 522 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-208ENST00000437607 CCDC187A0A096LP49 1063 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 A0A0J9YYE9 177 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 C1orf232A0A0U1RR37 186 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 FAM237BA0A1B0GVD1 139 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 CCDC78A2IDD5 438 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 ANKRD66B4E2M5 251 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 B8ZZF3 427 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 USP1O94782 785 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 TNFSF15O95150 251 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 TRBC1P01850 177 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 IVLP07476 585 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 CYP2A6P11509 494 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-208ENST00000437607 C6P13671 934 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 TIMP2P16035 220 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 CTPS1P17812 591 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 ADRA1DP25100 572 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 PDE1BQ01064 536 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 IFFO1Q0D2I5 559 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 CBLBQ13191 982 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 PTK2BQ14289 1009 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 CASP8Q14790 479 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 IRF4Q15306 451 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 KYNUQ16719 465 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 SPANXN3Q5MJ09 141 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 STEAP4Q687X5 459 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 KCTD16Q68DU8 428 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 ERAP2Q6P179 960 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 UNC5AQ6ZN44 842 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 HDXQ7Z353 690 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 TTC7BQ86TV6 843 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 ZSWIM9Q86XI8 627 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 AGGF1Q8N302 714 aaeCLIP12.04□□□□□ -0.48
PTPRF-208ENST00000437607 KYQ8NBH2 561 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.04□□□□□ -0.48
PTPRF-208ENST00000437607 PIH1D2Q8WWB5 315 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 SPOCK2Q92563 424 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 GLMNQ92990 594 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 NAT6Q93015 286 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 MED8Q96G25 268 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 WRAP53Q9BUR4 548 aaKnown RBP12.04□□□□□ -0.48
PTPRF-208ENST00000437607 GPR63Q9BZJ6 419 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 TRABDQ9H4I3 376 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 PADI4Q9UM07 663 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 COQ6Q9Y2Z9 468 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 RPS6KL1Q9Y6S9 549 aa12.04□□□□□ -0.48
PTPRF-208ENST00000437607 MAGEB16A2A368 324 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 C2orf81A6NN90 581 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 TM7SF2O76062 418 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 ANXA6P08133 673 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 ITGA2BP08514 1039 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 ALPIP09923 528 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 MLLT3P42568 568 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 RPIAP49247 311 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 PPARDQ03181 441 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 ELP6Q0PNE2 266 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 SRSF6Q13247 344 aaKnown RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 ARHGEF7Q14155 803 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 SPIDRQ14159 915 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 TCEA2Q15560 299 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 TAF1AQ15573 450 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 UAP1Q16222 522 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 ALG11Q2TAA5 492 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 KLHL38Q2WGJ6 581 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 TMEM52BQ4KMG9 183 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 TSTD2Q5T7W7 516 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 CCDC81Q6ZN84 652 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 LYSMD3Q7Z3D4 306 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 IGDCC3Q8IVU1 814 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 ARL14Q8N4G2 192 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 WDR48Q8TAF3 677 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 UHMK1Q8TAS1 419 aaKnown RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 BRSK1Q8TDC3 778 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 HCAR2Q8TDS4 363 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 TSACCQ96A04 125 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 CCDC97Q96F63 343 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 LIN37Q96GY3 246 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 MCCC1Q96RQ3 725 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-208ENST00000437607 KIFC1Q9BW19 673 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 SLC13A1Q9BZW2 595 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 SYNDIG1Q9H7V2 258 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 MAGEE1Q9HCI5 957 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 LRRC4CQ9HCJ2 640 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 SIRPGQ9P1W8 387 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 B4GALT6Q9UBX8 382 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 PLAAQ9Y263 795 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 PKP3Q9Y446 797 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 SPO11Q9Y5K1 396 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 ARL5AQ9Y689 179 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 SPTA1P02549 2419 aa12.03□□□□□ -0.48
PTPRF-208ENST00000437607 EXOC1LA0A1B0GW35 172 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 A0A1W2PQM1 296 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms