RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 RBM12BQ8IXT5 1001 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 TCEAL8Q8IYN2 117 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 FUBP1Q96AE4 644 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 TADA1Q96BN2 335 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 ERLEC1Q96DZ1 483 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 FEM1CQ96JP0 617 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 HERC2P3Q9BVR0 1158 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 COQ10BQ9H8M1 238 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 TAS2R13Q9NYV9 303 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 SEPT3Q9UH03 358 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 C7orf72A4D263 438 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 C2orf81A6NN90 581 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 E5RI56 91 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 ZSCAN9O15535 394 aaPredicted RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 OR4F21O95013 312 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 CRTAMO95727 393 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 TPP2P29144 1249 aaPredicted RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 KPNA2P52292 529 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 STX5Q13190 355 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 RBBP7Q16576 425 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 SGO1Q5FBB7 561 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 CHSY3Q70JA7 882 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 CCDC117Q8IWD4 279 aaPredicted RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 SPPL3Q8TCT6 385 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 MTFMTQ96DP5 389 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 RANBP9Q96S59 729 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 APOL5Q9BWW9 433 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 TDRD1Q9BXT4 1180 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 MAGEH1Q9H213 219 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 NKX2-4Q9H2Z4 354 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 CD274Q9NZQ7 290 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 EIF2B4Q9UI10 523 aaKnown RBP9.38□□□□□ -0.91
CUX1-206ENST00000437600 HCFC2Q9Y5Z7 792 aa9.38□□□□□ -0.91
CUX1-206ENST00000437600 BCAS2O75934 225 aaPredicted RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 TRIM16O95361 564 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CLIC3O95833 236 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 PPM1AP35813 382 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 UFM1P61960 85 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 DYNC1I2Q13409 638 aaKnown RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 SLC44A4Q53GD3 710 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 RFLNAQ6ZTI6 216 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 LYSMD3Q7Z3D4 306 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 ADGRD2Q7Z7M1 963 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 SLC22A9Q8IVM8 553 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 KREMEN2Q8NCW0 462 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 RIN3Q8TB24 985 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 JADE3Q92613 823 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 SLCO4A1Q96BD0 722 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 PLD4Q96BZ4 506 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 LINGO1Q96FE5 620 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CDK5RAP1Q96SZ6 601 aaKnown RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 PRPF18Q99633 342 aaKnown RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 MGME1Q9BQP7 344 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 HGH1Q9BTY7 390 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 OCEL1Q9H607 264 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 POLG2Q9UHN1 485 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 RIMS3Q9UJD0 308 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CROTQ9UKG9 612 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 AP4S1Q9Y587 144 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 AP4B1Q9Y6B7 739 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CCDC160A6NGH7 325 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 TRIM24O15164 1050 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 KDELR3O43731 214 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 WISP3O95389 354 aaPredicted RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 CTSAP10619 480 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 GPX3P22352 226 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 POLD2P49005 469 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 ZNF140P52738 457 aaPredicted RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 SLC14A2Q15849 920 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CMPK2Q5EBM0 449 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CTSL3PQ5NE16 218 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 C16orf87Q6PH81 154 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 SYVN1Q86TM6 617 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CMTM8Q8IZV2 173 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 OR2T11Q8NH01 316 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 STAG3L4Q8TBR4 150 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 MRPS31Q92665 395 aaKnown RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 NMD3Q96D46 503 aaKnown RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 CCDC126Q96EE4 140 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 TRAPPC9Q96Q05 1148 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 FEM1AQ9BSK4 669 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 SLC46A2Q9BY10 475 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 GPR63Q9BZJ6 419 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 VPS51Q9UID3 782 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 PRPF19Q9UMS4 504 aaKnown RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 SAC3D1A6NKF1 404 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 FFAR3O14843 346 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 GPR42O15529 346 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 AKAP10O43572 662 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 GREM1O60565 184 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 LILRB3O75022 631 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CLDN7O95471 211 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 EPCAMP16422 314 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 LPOP22079 712 aaPredicted RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 WEE1P30291 646 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 GSTT1P30711 240 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 STK19P49842 368 aaPredicted RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 RHOAP61586 193 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 PAGE3Q5JUK9 113 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 OGFRL1Q5TC84 451 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms