RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 LILRB5O75023 590 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 COL6A2P12110 1019 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 SERPINB3P29508 390 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 SLC1A6P48664 564 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PRKAA2P54646 552 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 TBCCQ15814 346 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 WSCD2Q2TBF2 565 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 SETMARQ53H47 684 aaPredicted RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PPM1JQ5JR12 505 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 ESRP1Q6NXG1 681 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 CMC1Q7Z7K0 106 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 ZC3HC1Q86WB0 502 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 KIF2BQ8N4N8 673 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 GPR26Q8NDV2 337 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 RDH11Q8TC12 318 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PPP4R1Q8TF05 950 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 SCAMP4Q969E2 229 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 AP2M1Q96CW1 435 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 DTD2Q96FN9 168 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 CDKN2AIPNLQ96HQ2 116 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 NSL1Q96IY1 281 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 DNAJC1Q96KC8 554 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 HSPA12BQ96MM6 686 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 LENG8Q96PV6 779 aaPredicted RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PRRX2Q99811 253 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 C19orf43Q9BQ61 176 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 FAM167BQ9BTA0 163 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 C1QTNF7Q9BXJ2 289 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 ABCG8Q9H221 673 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 IL26Q9NPH9 171 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 RAD18Q9NS91 495 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 KCTD5Q9NXV2 234 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 RIMKLBQ9ULI2 386 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 TRIM33Q9UPN9 1127 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 FNDC3AQ9Y2H6 1198 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 CCL22O00626 93 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 FCHO1O14526 889 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 RAD51BO15315 384 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 C2P06681 752 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 RALBP11234 206 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 CPA3P15088 417 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 CALB2P22676 271 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PSMA3P25788 255 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 MAOBP27338 520 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 NUDT1P36639 197 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PTGER3P43115 390 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PTPN5P54829 565 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 IRX4P78413 519 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 ILF2Q12905 390 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 SIM2Q14190 667 aaPredicted RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PLK5Q496M5 336 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 ZDHHC20Q5W0Z9 365 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 KIAA0408Q6ZU52 694 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 NLRP8Q86W28 1048 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 OR13J1Q8NGT2 312 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 OR6Y1Q8NGX8 325 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PIWIL2Q8TC59 973 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 SNX19Q92543 992 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PEX13Q92968 403 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 NUS1Q96E22 293 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 PTCD3Q96EY7 689 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 ZC3H10Q96K80 434 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 TBATAQ96M53 351 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 TSNARE1Q96NA8 513 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 RIOK2Q9BVS4 552 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 CDH19Q9H159 772 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 SUDS3Q9H7L9 328 aaPredicted RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 MBNL1Q9NR56 388 aaKnown RBP13.28□□□□□ -0.28
LIMS1-204ENST00000409441 TREX1Q9NSU2 369 aa13.28□□□□□ -0.28
LIMS1-204ENST00000409441 A0A1W2PPC4 97 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 MEI4A8MW99 385 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 TMEM114B3SHH9 223 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 RHOBTB1O94844 696 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 CBX6O95503 412 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 HNRNPA2B1P22626 353 aaKnown RBP13.27□□□□□ -0.29
LIMS1-204ENST00000409441 CD27P26842 260 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 SPAM1P38567 509 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 ARCN1P48444 511 aaKnown RBP13.27□□□□□ -0.29
LIMS1-204ENST00000409441 ARSDP51689 593 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 MNAT1P51948 309 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 ACVR1Q04771 509 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 DPTQ07507 201 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 THOC5Q13769 683 aaKnown RBP13.27□□□□□ -0.29
LIMS1-204ENST00000409441 PMS2CLQ68D20 193 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 ZNF765Q7L2R6 523 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 ARMCX6Q7L4S7 300 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 C10orf107Q8IVU9 208 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 TP53I13Q8NBR0 393 aaPredicted RBP13.27□□□□□ -0.29
LIMS1-204ENST00000409441 CALML6Q8TD86 181 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 HDAC10Q969S8 669 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 PLEKHG4BQ96PX9 1271 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 MYOCQ99972 504 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 ORAI3Q9BRQ5 295 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 FZD3Q9NPG1 666 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 BAIAP2L1Q9UHR4 511 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 EIF2B4Q9UI10 523 aaKnown RBP13.27□□□□□ -0.29
LIMS1-204ENST00000409441 FKBPLQ9UIM3 349 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 TLK1Q9UKI8 766 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 DMTF1Q9Y222 760 aa13.27□□□□□ -0.29
LIMS1-204ENST00000409441 R4GN57 208 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms