RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 C1orf61Q13536 156 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 TMEM220Q6QAJ8 160 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 DENND6AQ8IWF6 608 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 SLC25A45Q8N413 288 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 FSTL5Q8N475 847 aaPredicted RBP28.93■■■□□ 2.22
USP42-202ENST00000404008 CLDN19Q8N6F1 224 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 LMX1AQ8TE12 382 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 SCG3Q8WXD2 468 aaKnown RBP28.93■■■□□ 2.22
USP42-202ENST00000404008 LRRC4CQ9HCJ2 640 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 PPANQ9NQ55 473 aaKnown RBP28.93■■■□□ 2.22
USP42-202ENST00000404008 ST14Q9Y5Y6 855 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 CABIN1Q9Y6J0 2220 aa28.93■■■□□ 2.22
USP42-202ENST00000404008 C4orf47A7E2U8 309 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 KMOO15229 486 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 CELA2BP08218 269 aaPredicted RBP28.92■■■□□ 2.22
USP42-202ENST00000404008 MYBL2P10244 700 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 SLC1A2P43004 574 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 SLC14A1Q13336 389 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 LRP8Q14114 963 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 ELOCQ15369 112 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 TCEA2Q15560 299 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 ERCC6LQ2NKX8 1250 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 BCL7AQ4VC05 210 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 RNF187Q5TA31 235 aaPredicted RBP28.92■■■□□ 2.22
USP42-202ENST00000404008 CHST15Q7LFX5 561 aaPredicted RBP28.92■■■□□ 2.22
USP42-202ENST00000404008 C11orf96Q7Z7L8 435 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 GATAD2AQ86YP4 633 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 CNTN4Q8IWV2 1026 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 GPBAR1Q8TDU6 330 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 PLEKHM1Q9Y4G2 1056 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 CSNK1G3Q9Y6M4 447 aa28.92■■■□□ 2.22
USP42-202ENST00000404008 NDUFS3O75489 264 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 AP2A2O94973 939 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 ZNF7P17097 686 aaPredicted RBP28.91■■■□□ 2.22
USP42-202ENST00000404008 PRLHRP49683 370 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 CTBSQ01459 385 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 CTBP1Q13363 440 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 STPG1Q5TH74 334 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 C3orf62Q6ZUJ4 267 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 GSPT2Q8IYD1 628 aaKnown RBP28.91■■■□□ 2.22
USP42-202ENST00000404008 CCL4L1Q8NHW4 92 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 GABPB2Q8TAK5 448 aaPredicted RBP28.91■■■□□ 2.22
USP42-202ENST00000404008 INTS10Q9NVR2 710 aaKnown RBP28.91■■■□□ 2.22
USP42-202ENST00000404008 PRSS21Q9Y6M0 314 aa28.91■■■□□ 2.22
USP42-202ENST00000404008 LOC105378220A0A1B0GUY1 285 aaPredicted RBP28.9■■■□□ 2.22
USP42-202ENST00000404008 PFDN6O15212 129 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 S1PR4O95977 384 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 ACP5P13686 325 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 LIMK1P53667 647 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 MGAT5Q09328 741 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 ILF3Q12906 894 aaKnown RBP eCLIP28.9■■■□□ 2.22
USP42-202ENST00000404008 PLA2G4EQ3MJ16 856 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 TEDDM1Q5T9Z0 273 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 DBX2Q6ZNG2 339 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 NRROSQ86YC3 692 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 SDR16C5Q8N3Y7 309 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 BEND7Q8N7W2 519 aaPredicted RBP28.9■■■□□ 2.22
USP42-202ENST00000404008 C2CD4AQ8NCU7 369 aaPredicted RBP28.9■■■□□ 2.22
USP42-202ENST00000404008 LPGAT1Q92604 370 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 TIMM29Q9BSF4 260 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 P2RY12Q9H244 342 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 CDC42EP4Q9H3Q1 356 aaKnown RBP28.9■■■□□ 2.22
USP42-202ENST00000404008 NINJ2Q9NZG7 142 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 SLC23A2Q9UGH3 650 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 FBXO5Q9UKT4 447 aa28.9■■■□□ 2.22
USP42-202ENST00000404008 TCRBV9S1A1TA0A576 114 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 LMO7DNF2Z398 122 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 SPAG6O75602 509 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 FAM153BP0C7A2 387 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 SLMAPQ14BN4 828 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 KYNUQ16719 465 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 UAP1L1Q3KQV9 507 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 FAM153CQ494X1 144 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 ZNF449Q6P9G9 518 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 CYS1Q717R9 158 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 GSDMCQ9BYG8 508 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 VPS9D1Q9Y2B5 631 aa28.89■■■□□ 2.22
USP42-202ENST00000404008 DNMT3AQ9Y6K1 912 aaPredicted RBP28.89■■■□□ 2.22
USP42-202ENST00000404008 CFAP54Q96N23 3096 aa28.89■■■□□ 2.21
USP42-202ENST00000404008 NEMP2A6NFY4 417 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 PRMT5O14744 637 aaPredicted RBP28.88■■■□□ 2.21
USP42-202ENST00000404008 F7P08709 466 aaPredicted RBP28.88■■■□□ 2.21
USP42-202ENST00000404008 GIMD1P0DJR0 217 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 CD59P13987 128 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 AK4P27144 223 aaPredicted RBP28.88■■■□□ 2.21
USP42-202ENST00000404008 VSNL1P62760 191 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 MPP1Q00013 466 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 SUZ12Q15022 739 aaKnown RBP28.88■■■□□ 2.21
USP42-202ENST00000404008 INSCQ1MX18 579 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 ZNF789Q5FWF6 425 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 WDR93Q6P2C0 686 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 CCNI2Q6ZMN8 369 aaPredicted RBP28.88■■■□□ 2.21
USP42-202ENST00000404008 LRRC6Q86X45 466 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 GKN2Q86XP6 184 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP28.88■■■□□ 2.21
USP42-202ENST00000404008 LINC00615Q96LM1 132 aaPredicted RBP28.88■■■□□ 2.21
USP42-202ENST00000404008 FBXO6Q9NRD1 293 aaPredicted RBP28.88■■■□□ 2.21
USP42-202ENST00000404008 SLC17A6Q9P2U8 582 aa28.88■■■□□ 2.21
USP42-202ENST00000404008 ASCC3Q8N3C0 2202 aaKnown RBP28.88■■■□□ 2.21
USP42-202ENST00000404008 UBA6A0AVT1 1052 aaPredicted RBP28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms