RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RNF168Q8IYW5 571 aaPredicted RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 ZNF420Q8TAQ5 688 aaPredicted RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 FUBP1Q96AE4 644 aaKnown RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 ACTL8Q9H568 366 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 ZMYM5Q9UJ78 669 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 KRBA1A5PL33 1030 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 SEC14L2O76054 403 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 TPD52P55327 224 aaPredicted RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 IL1RL1Q01638 556 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 C6orf136Q5SQH8 315 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 TMEM236Q5W0B7 351 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 CRTC3Q6UUV7 619 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 SPESP1Q6UW49 350 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 MILR1Q7Z6M3 343 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 RIMKLAQ8IXN7 391 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 PIANPQ8IYJ0 282 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 TBC1D21Q8IYX1 336 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 CLHC1Q8NHS4 586 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 TAMM41Q96BW9 452 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 AURKBQ96GD4 344 aaPredicted RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 BARD1Q99728 777 aaKnown RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 RIC8BQ9NVN3 520 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 VAPAQ9P0L0 249 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 DAPK2Q9UIK4 370 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 ZNF232Q9UNY5 417 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 RALGAPA2Q2PPJ7 1873 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 A0A0D9SEW6 157 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 GOLGA8CPA6NN73 597 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 NOL3O60936 208 aaKnown RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 MATN4O95460 622 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 ITGB6P18564 788 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 MAP2K4P45985 399 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 MLLT6P55198 1093 aaPredicted RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 TXNDC11Q6PKC3 985 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 DLEU7Q6UYE1 221 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 SLC16A12Q6ZSM3 486 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 SFRP1Q8N474 314 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 OR10A6Q8NH74 314 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 BPIFB1Q8TDL5 484 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 HEPHQ9BQS7 1158 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 CD320Q9NPF0 282 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 ERGIC3Q9Y282 383 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 ZNF701M0R085 212 aaPredicted RBP20.75■□□□□ 0.91
CTCF-202ENST00000401394 SNX2O60749 519 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 CLPXO76031 633 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 CPNE6O95741 557 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 MLYCDO95822 493 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 THRBP10828 461 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 ADAM17P78536 824 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 CD47Q08722 323 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 DGCR6Q14129 220 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 UPP1Q16831 310 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 RGS21Q2M5E4 152 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 LETMD1Q6P1Q0 360 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 TLK2Q86UE8 772 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 ITFG1Q8TB96 612 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 EEF1AKMT1Q8WVE0 214 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 MBOAT4Q96T53 435 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 YIPF2Q9BWQ6 316 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 ABCG8Q9H221 673 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 ARNT2Q9HBZ2 717 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 SLC6A13Q9NSD5 602 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 ARVCFO00192 962 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 RGRP47804 291 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 ERVPABLB-1P60509 514 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 SFSWAPQ12872 951 aaKnown RBP20.75■□□□□ 0.91
CTCF-202ENST00000401394 RFTN2Q52LD8 501 aaPredicted RBP20.75■□□□□ 0.91
CTCF-202ENST00000401394 NDNFQ8TB73 568 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 CHPT1Q8WUD6 406 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.75■□□□□ 0.913e-10■■■■■ 47.1
CTCF-202ENST00000401394 TRIM54Q9BYV2 358 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 PSME2Q9UL46 239 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 PTCH2Q9Y6C5 1203 aa20.75■□□□□ 0.91
CTCF-202ENST00000401394 PAPSS2O95340 614 aaPredicted RBP20.74■□□□□ 0.91
CTCF-202ENST00000401394 RENBPP51606 427 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 AFMIDQ63HM1 303 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 ANKS6Q68DC2 871 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 PRMT9Q6P2P2 845 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 OR4L1Q8NH43 312 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 FKBP10Q96AY3 582 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 VPS51Q9UID3 782 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 MAGP20916 626 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 NFKB2Q00653 900 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 KCNAB2Q13303 367 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 SGO1Q5FBB7 561 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 MS4A13Q5J8X5 152 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 ZNF362Q5T0B9 420 aaPredicted RBP20.74■□□□□ 0.91
CTCF-202ENST00000401394 TIGD7Q6NT04 549 aaPredicted RBP20.74■□□□□ 0.91
CTCF-202ENST00000401394 GALNT10Q86SR1 603 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 PTRH1Q86Y79 214 aaKnown RBP20.74■□□□□ 0.91
CTCF-202ENST00000401394 OR4K2Q8NGD2 314 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 BDH2Q9BUT1 245 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 MIR1-1HGQ9H1L0 117 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 CATSPERZQ9NTU4 200 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 LIMD1Q9UGP4 676 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 PNMA8BQ9ULN7 279 aaPredicted RBP20.74■□□□□ 0.91
CTCF-202ENST00000401394 NEUROG3Q9Y4Z2 214 aa20.74■□□□□ 0.91
CTCF-202ENST00000401394 POLR3HQ9Y535 204 aaPredicted RBP20.74■□□□□ 0.91
CTCF-202ENST00000401394 SCAMP3O14828 347 aaKnown RBP20.73■□□□□ 0.91
CTCF-202ENST00000401394 FFAR3O14843 346 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms