RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 SMYD1Q8NB12 490 aa16.1■□□□□ 0.17
NKX3-1-201ENST00000380871 CASD1Q96PB1 797 aa16.1■□□□□ 0.17
NKX3-1-201ENST00000380871 SARS2Q9NP81 518 aaKnown RBP16.1■□□□□ 0.17
NKX3-1-201ENST00000380871 ANAPC2Q9UJX6 822 aa16.1■□□□□ 0.17
NKX3-1-201ENST00000380871 H0Y858 1186 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 ARVCFO00192 962 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 SYN3O14994 580 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 ZSCAN9O15535 394 aaPredicted RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 RHOBTB1O94844 696 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 TCF3P15923 654 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 ATF6P18850 670 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 HOXD10P28358 340 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 SELPLGQ14242 412 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 NANOGP8Q6NSW7 305 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 LRRC43Q8N309 656 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 FBXO22Q8NEZ5 403 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 GABPB2Q8TAK5 448 aaPredicted RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 TBC1D15Q8TC07 691 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 ADAMTS16Q8TE57 1224 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 BIRC7Q96CA5 298 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 MUS81Q96NY9 551 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 NANOGQ9H9S0 305 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 TLR9Q9NR96 1032 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 CREBZFQ9NS37 354 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 CATSPERZQ9NTU4 200 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 NLRC5Q86WI3 1866 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 PTPRDP23468 1912 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 LOC285095A0A1B0GVY8 99 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 J3QRK9 145 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 SLC26A3P40879 764 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 SGSHP51688 502 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 FAM189BP81408 668 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 PLD1Q13393 1074 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 SERINC3Q13530 473 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 MSANTD2Q6P1R3 559 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 PATL1Q86TB9 770 aaKnown RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 ZNF554Q86TJ5 538 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 WBP2Q969T9 261 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 FBXL8Q96CD0 374 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 NSMCE3Q96MG7 304 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 TTPALQ9BTX7 342 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 CHID1Q9BWS9 393 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 POLR1EQ9GZS1 481 aaKnown RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 PTBP2Q9UKA9 531 aaKnown RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 DOLKQ9UPQ8 538 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 DOCK4Q8N1I0 1966 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 CCDC154A6NI56 674 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 EEF1B2P24534 225 aaKnown RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 SHMT2P34897 504 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 ARL1P40616 181 aaPredicted RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 IST1P53990 364 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 MTPNP58546 118 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 NOGQ13253 232 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 GPR17Q13304 367 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 LHX8Q68G74 356 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 OR4L1Q8NH43 312 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 PPM1MQ96MI6 270 aa16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 AARSD1Q9BTE6 412 aaKnown RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 IFT80Q9P2H3 777 aaPredicted RBP16.09■□□□□ 0.17
NKX3-1-201ENST00000380871 OR6C75A6NL08 312 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 GPIP06744 558 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 ATP5C1P36542 298 aaKnown RBP16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 ALDH7A1P49419 539 aaKnown RBP16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 CCR3P51677 355 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 STC1P52823 247 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 GPNMBQ14956 572 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 ANKRD34AQ69YU3 496 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 Q6ZNX1 250 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 GALNT7Q86SF2 657 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 ZC3H7AQ8IWR0 971 aaKnown RBP16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 LPCAT1Q8NF37 534 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 OR6K2Q8NGY2 324 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 TRIM54Q9BYV2 358 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 AIG1Q9NVV5 245 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 SPO11Q9Y5K1 396 aa16.08■□□□□ 0.17
NKX3-1-201ENST00000380871 BTN3A1O00481 513 aa16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 GPR39O43194 453 aa16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 LDLRP01130 860 aa16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 DCKP27707 260 aa16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 DEFB115Q30KQ5 88 aa16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 MRNIPQ6NTE8 343 aa16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 FUBP1Q96AE4 644 aaKnown RBP16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 PLEKHG4BQ96PX9 1271 aa16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 GPR21Q99679 349 aa16.08■□□□□ 0.16
NKX3-1-201ENST00000380871 BNIP3LO60238 219 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 UGT1A1P22309 533 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 UGT1A4P22310 534 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 UGT1A3P35503 534 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 UGT1A5P35504 534 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 RBBP7Q16576 425 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 FAM86B1Q8N7N1 296 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 CDYL2Q8N8U2 506 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 LZICQ8WZA0 190 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 ZBED2Q9BTP6 218 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 CINPQ9BW66 212 aaPredicted RBP16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 FAIMQ9NVQ4 179 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 CDH7Q9ULB5 785 aa16.07■□□□□ 0.16
NKX3-1-201ENST00000380871 MOXD2PA6NHM9 499 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms