RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NELFEP18615 380 aaKnown RBP13.22□□□□□ -0.29
CCDC3-202ENST00000378839 CD9P21926 228 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 PTGER3P43115 390 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 MNX1P50219 401 aaPredicted RBP13.22□□□□□ -0.29
CCDC3-202ENST00000378839 ADARP55265 1226 aaKnown RBP13.22□□□□□ -0.29
CCDC3-202ENST00000378839 KIAA2013Q8IYS2 634 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 SLC39A11Q8N1S5 342 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 EZH1Q92800 747 aaPredicted RBP13.22□□□□□ -0.29
CCDC3-202ENST00000378839 TMEM125Q96AQ2 219 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 ACTL8Q9H568 366 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 IL26Q9NPH9 171 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 EPS15L1Q9UBC2 864 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 BCAP29Q9UHQ4 241 aa13.22□□□□□ -0.29
CCDC3-202ENST00000378839 DLGAP1O14490 977 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 CLDN7O95471 211 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 MTHFD1P11586 935 aaKnown RBP13.21□□□□□ -0.29
CCDC3-202ENST00000378839 DEFB103AP81534 67 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 RCAN2Q14206 197 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 CWF19L1Q69YN2 538 aaKnown RBP13.21□□□□□ -0.29
CCDC3-202ENST00000378839 IYDQ6PHW0 289 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 GAREM2Q75VX8 874 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 TSPAN33Q86UF1 283 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 HS6ST3Q8IZP7 471 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 DNAJB14Q8TBM8 379 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 DHRS7Q9Y394 339 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 SCN8AQ9UQD0 1980 aa13.21□□□□□ -0.29
CCDC3-202ENST00000378839 FAM149AA5PLN7 773 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 BBIP1A8MTZ0 92 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 PRRG1O14668 218 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 IDO1P14902 403 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 GJA1P17302 382 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 HNF1BP35680 557 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 CTSOP43234 321 aaPredicted RBP13.21□□□□□ -0.3
CCDC3-202ENST00000378839 CACNG1Q06432 222 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 TAF12Q16514 161 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 DGKKQ5KSL6 1271 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 C6orf136Q5SQH8 315 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 GPRIN3Q6ZVF9 776 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 SERPINA9Q86WD7 417 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 ST13P4Q8IZP2 240 aaPredicted RBP13.21□□□□□ -0.3
CCDC3-202ENST00000378839 OR2T34Q8NGX1 318 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 OR2T3Q8NH03 318 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 PROKR1Q8TCW9 393 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 EME1Q96AY2 570 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 MYO19Q96H55 970 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 ZNF597Q96LX8 424 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 GPR63Q9BZJ6 419 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 CIPCQ9C0C6 399 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 FAM192AQ9GZU8 254 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 SMG9Q9H0W8 520 aaKnown RBP13.21□□□□□ -0.3
CCDC3-202ENST00000378839 NSUN3Q9H649 340 aaKnown RBP13.21□□□□□ -0.3
CCDC3-202ENST00000378839 MAGEE1Q9HCI5 957 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 INTS7Q9NVH2 962 aaKnown RBP13.21□□□□□ -0.3
CCDC3-202ENST00000378839 RHBDL2Q9NX52 303 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 SAGE1Q9NXZ1 904 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 MBD1Q9UIS9 605 aaPredicted RBP13.21□□□□□ -0.3
CCDC3-202ENST00000378839 INTS6Q9UL03 887 aaKnown RBP13.21□□□□□ -0.3
CCDC3-202ENST00000378839 LZTS1Q9Y250 596 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 INSL5Q9Y5Q6 135 aa13.21□□□□□ -0.3
CCDC3-202ENST00000378839 E5RI56 91 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ANGPT2O15123 496 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 CRCPO75575 148 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 BAIAP3O94812 1187 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 PRAMEF1O95521 474 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 OLFM2O95897 454 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ESR1P03372 595 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 CNPP09543 421 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 NCK1P16333 377 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 CD70P32970 193 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 GDF5P43026 501 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 PRKCQQ04759 706 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 RAB33AQ14088 237 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 TRIM60Q495X7 471 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 TPGS2Q68CL5 300 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 RFLNAQ6ZTI6 216 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 EPHX4Q8IUS5 362 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 CHERPQ8IWX8 916 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 BBS7Q8IWZ6 715 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 MYO1HQ8N1T3 1032 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 PCYOX1LQ8NBM8 494 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ZNF689Q96CS4 500 aaPredicted RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 BRINP2Q9C0B6 783 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 MRGBPQ9NV56 204 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 DUS2Q9NX74 493 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 HSFX1Q9UBD0 423 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 NEUROG3Q9Y4Z2 214 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 A0A1W2PP18 115 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 RPL10P27635 214 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 TLE2Q04725 743 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ILF2Q12905 390 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 PHKG1Q16816 387 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 SPOUT1Q5T280 376 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ZNF783Q6ZMS7 281 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 GOLGA7Q7Z5G4 137 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 HOPXQ9BPY8 73 aaPredicted RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ABCG8Q9H221 673 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 RC3H2Q9HBD1 1191 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 PAK6Q9NQU5 681 aaPredicted RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 KATNA1O75449 491 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 CAPN1P07384 714 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms