RNA–Protein interactions for RNA: ENST00000374490.7

HMGCL-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCL, Length 1,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-203ENST00000374490 C9orf16Q9BUW7 83 aa13.8□□□□□ -0.2
HMGCL-203ENST00000374490 ANKRD60Q9BZ19 345 aa13.8□□□□□ -0.2
HMGCL-203ENST00000374490 SEMA4BQ9NPR2 832 aaPredicted RBP13.8□□□□□ -0.2
HMGCL-203ENST00000374490 HSFX1Q9UBD0 423 aa13.8□□□□□ -0.2
HMGCL-203ENST00000374490 SUN2Q9UH99 717 aa13.8□□□□□ -0.2
HMGCL-203ENST00000374490 BTRCQ9Y297 605 aa13.8□□□□□ -0.2
HMGCL-203ENST00000374490 PCDHB1Q9Y5F3 818 aa13.8□□□□□ -0.2
HMGCL-203ENST00000374490 PCDHA9Q9Y5H5 950 aa13.8□□□□□ -0.2
HMGCL-203ENST00000374490 TNPO3Q9Y5L0 923 aaKnown RBP13.8□□□□□ -0.2
HMGCL-203ENST00000374490 EYSQ5T1H1 3165 aa13.8□□□□□ -0.2
HMGCL-203ENST00000374490 FAM234BA2RU67 622 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CDC7O00311 574 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 PPP6CO00743 305 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 HTRA2O43464 458 aaPredicted RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CSPG5O95196 566 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 H6PDO95479 791 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 F11P03951 625 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SLC6A2P23975 617 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 FASP25445 335 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TUBA4AP68366 448 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 PRKCQQ04759 706 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 NADK2Q4G0N4 442 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 IYDQ6PHW0 289 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 RSPO2Q6UXX9 243 aaPredicted RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CERS6Q6ZMG9 384 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SYVN1Q86TM6 617 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TMEM173Q86WV6 379 aaPredicted RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 PTRH1Q86Y79 214 aaKnown RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 DENND1CQ8IV53 801 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SPNS2Q8IVW8 549 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TTC30BQ8N4P2 665 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CANT1Q8WVQ1 401 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 LINGO1Q96FE5 620 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 PDLIM5Q96HC4 596 aaKnown RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 MYRFLQ96LU7 910 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 KCNA7Q96RP8 456 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SLC52A3Q9NQ40 469 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CMTM6Q9NX76 183 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 FKBPLQ9UIM3 349 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 MYRFQ9Y2G1 1151 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 BACE2Q9Y5Z0 518 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 C7orf72A4D263 438 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CARNS1A5YM72 827 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 ZNF840PA6NDX5 716 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CCDC154A6NI56 674 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 ANKRD66B4E2M5 251 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 E5RI56 91 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TIPRLO75663 272 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SLC22A3O75751 556 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TSPAN12O95859 305 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 S100BP04271 92 aaPredicted RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 ZNF23P17027 643 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CORO1AP31146 461 aaKnown RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 PPP3CCP48454 512 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 NME5P56597 212 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 RPS24P62847 133 aaKnown RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CACNG1Q06432 222 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 NRF1Q16656 503 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TMEM259Q4ZIN3 620 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 ZRANB3Q5FWF4 1079 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 ADGRF1Q5T601 910 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SLC8B1Q6J4K2 584 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 KIAA1841Q6NSI8 718 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 FAM117BQ6P1L5 589 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 NCEH1Q6PIU2 408 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 AMIGO2Q86SJ2 522 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 GALNT13Q8IUC8 556 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SNX31Q8N9S9 440 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 FBXO22Q8NEZ5 403 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TNIP2Q8NFZ5 429 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TSPAN14Q8NG11 270 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CD200R1Q8TD46 325 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TMEM125Q96AQ2 219 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CENPNQ96H22 339 aaPredicted RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 ZNF558Q96NG5 402 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CIB1Q99828 191 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SLC39A3Q9BRY0 314 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TMEM79Q9BSE2 394 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 GRIP2Q9C0E4 1043 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 RBM38Q9H0Z9 239 aaKnown RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 NOL11Q9H8H0 719 aaKnown RBP13.79□□□□□ -0.2
HMGCL-203ENST00000374490 CD274Q9NZQ7 290 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 TRPM5Q9NZQ8 1165 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 MTRRQ9UBK8 725 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 SLC8A2Q9UPR5 921 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 RNF11Q9Y3C5 154 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 PKP3Q9Y446 797 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 PTGDR2Q9Y5Y4 395 aa13.79□□□□□ -0.2
HMGCL-203ENST00000374490 H3BNH8 94 aa13.78□□□□□ -0.2
HMGCL-203ENST00000374490 CBX4O00257 560 aa13.78□□□□□ -0.2
HMGCL-203ENST00000374490 ARPC2O15144 300 aa13.78□□□□□ -0.2
HMGCL-203ENST00000374490 COCHO43405 550 aa13.78□□□□□ -0.2
HMGCL-203ENST00000374490 STC2O76061 302 aa13.78□□□□□ -0.2
HMGCL-203ENST00000374490 PRSS56P0CW18 603 aa13.78□□□□□ -0.2
HMGCL-203ENST00000374490 ATP6V1B1P15313 513 aa13.78□□□□□ -0.2
HMGCL-203ENST00000374490 POLR2JP52435 117 aaKnown RBP13.78□□□□□ -0.2
HMGCL-203ENST00000374490 PCBP2Q15366 365 aaKnown RBP eCLIP13.78□□□□□ -0.2
HMGCL-203ENST00000374490 KCTD21Q4G0X4 260 aa13.78□□□□□ -0.2
HMGCL-203ENST00000374490 INO80DQ53TQ3 878 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms