RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 DNASE1L3Q13609 305 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 PCSK7Q16549 785 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 IRGCQ6NXR0 463 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 NT5DC3Q86UY8 548 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 PPP1R3BQ86XI6 285 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 RBM12BQ8IXT5 1001 aaKnown RBP13.54□□□□□ -0.24
CXCL12-202ENST00000374426 CT55Q8WUE5 264 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 CXorf40BQ96DE9 158 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 ZDHHC12Q96GR4 267 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 AGAP3Q96P47 875 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 PACSIN1Q9BY11 444 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 TWSG1Q9GZX9 223 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 RAB33BQ9H082 229 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 SLC25A51Q9H1U9 297 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 UVRAGQ9P2Y5 699 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 TRIM10Q9UDY6 481 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 PADI1Q9ULC6 663 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 WDR37Q9Y2I8 494 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 HEY1Q9Y5J3 304 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 SPO11Q9Y5K1 396 aa13.54□□□□□ -0.24
CXCL12-202ENST00000374426 IGHV5-51A0A0C4DH38 117 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 PIPSLA2A3N6 862 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 LRRD1A4D1F6 860 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 C3orf70A6NLC5 250 aaPredicted RBP13.53□□□□□ -0.24
CXCL12-202ENST00000374426 DNAJB5O75953 348 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 RECKO95980 971 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 GYPCP04921 128 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 CCNYL3P0C7X3 344 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 FANCCQ00597 558 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 AP1B1Q10567 949 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 ATP13A5Q4VNC0 1218 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 ZFYVE27Q5T4F4 411 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 SLC9A4Q6AI14 798 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 ATCAYQ86WG3 371 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 LURAP1LQ8IV03 231 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 APLFQ8IW19 511 aaPredicted RBP13.53□□□□□ -0.24
CXCL12-202ENST00000374426 SPATA22Q8NHS9 363 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 SLC41A2Q96JW4 573 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 OLFM3Q96PB7 478 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 VPS35Q96QK1 796 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 AKIRIN1Q9H9L7 192 aaPredicted RBP13.53□□□□□ -0.24
CXCL12-202ENST00000374426 LHX9Q9NQ69 397 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 SEMA5BQ9P283 1151 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 LUC7L2Q9Y383 392 aaKnown RBP13.53□□□□□ -0.24
CXCL12-202ENST00000374426 ITPR2Q14571 2701 aa13.53□□□□□ -0.24
CXCL12-202ENST00000374426 BLACEA4D250 179 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 ZNF487B1APH4 448 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 C21orf140B9A014 251 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 NDST3O95803 873 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 MT-CYBP00156 380 aaPredicted RBP13.52□□□□□ -0.25
CXCL12-202ENST00000374426 MT-ND3P03897 115 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 H2AFZP0C0S5 128 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 FOLR1P15328 257 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 CASP14P31944 242 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 TMEM115Q12893 351 aaPredicted RBP13.52□□□□□ -0.25
CXCL12-202ENST00000374426 TUBB3Q13509 450 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 KCNAB1Q14722 419 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 PDK1Q15118 436 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 SLC14A2Q15849 920 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 PWWP2BQ6NUJ5 590 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 NPNTQ6UXI9 565 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 H2AFVQ71UI9 128 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 B4GALNT4Q76KP1 1039 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 TRAPPC5Q8IUR0 188 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 GPR150Q8NGU9 434 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 CTNNBL1Q8WYA6 563 aaPredicted RBP13.52□□□□□ -0.25
CXCL12-202ENST00000374426 RUFY1Q96T51 708 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 TRIM55Q9BYV6 548 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 ACTL8Q9H568 366 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 CBX8Q9HC52 389 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 BPIFA1Q9NP55 256 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 PDE7BQ9NP56 450 aa13.52□□□□□ -0.25
CXCL12-202ENST00000374426 APOL1O14791 398 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 PMPCBO75439 489 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 VCLP18206 1134 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 FECHP22830 423 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 ANP32AP39687 249 aaKnown RBP13.51□□□□□ -0.25
CXCL12-202ENST00000374426 UQCRFS1P47985 274 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 UBASH3AP57075 661 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 SEMA5AQ13591 1074 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 CERS6Q6ZMG9 384 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 VSIG1Q86XK7 387 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 SIDT2Q8NBJ9 832 aaKnown RBP13.51□□□□□ -0.25
CXCL12-202ENST00000374426 GDAP1Q8TB36 358 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.51□□□□□ -0.25
CXCL12-202ENST00000374426 UBXN4Q92575 508 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 IQCDQ96DY2 449 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 FCRL4Q96PJ5 515 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 GLOD4Q9HC38 313 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 IL26Q9NPH9 171 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 UBP1Q9NZI7 540 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 LCMT1Q9UIC8 334 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 RARRES3Q9UL19 164 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 MED13Q9UHV7 2174 aa13.51□□□□□ -0.25
CXCL12-202ENST00000374426 PPP1R12AO14974 1030 aaPredicted RBP13.5□□□□□ -0.25
CXCL12-202ENST00000374426 GPR39O43194 453 aa13.5□□□□□ -0.25
CXCL12-202ENST00000374426 EBLN1P0CF75 366 aa13.5□□□□□ -0.25
CXCL12-202ENST00000374426 HNRNPH3P31942 346 aaKnown RBP13.5□□□□□ -0.25
CXCL12-202ENST00000374426 CA5AP35218 305 aa13.5□□□□□ -0.25
CXCL12-202ENST00000374426 HMGCLP35914 325 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms