RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CDH13P55290 713 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 GALNT1Q10472 559 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 UBAP2LQ14157 1087 aaKnown RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 SEL1L3Q68CR1 1132 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 CUZD1Q86UP6 607 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 KIF2BQ8N4N8 673 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 TRAM1L1Q8N609 369 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 ZBTB2Q8N680 514 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 PTCD3Q96EY7 689 aaKnown RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 PPP1R36Q96LQ0 422 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 COQ10AQ96MF6 247 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 CCDC106Q9BWC9 280 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 NUF2Q9BZD4 464 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 WDR55Q9H6Y2 383 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 SAR1AQ9NR31 198 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 LATS2Q9NRM7 1088 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 APOBEC2Q9Y235 224 aaKnown RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 COQ6Q9Y2Z9 468 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 ASB1Q9Y576 335 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 CCDC189A1A4V9 331 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 NCF1BA6NI72 391 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 NCF1CA8MVU1 366 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 K7EQS6 105 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 APODP05090 189 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 NCF1P14598 390 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 CCR7P32248 378 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 WASP42768 502 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 AGTR2P50052 363 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 HK2P52789 917 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 KCNJ2P63252 427 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 PPP1R3AQ16821 1122 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 ZNF648Q5T619 568 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 FBXL19Q6PCT2 694 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 TXNDC11Q6PKC3 985 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 CYHR1Q6ZMK1 362 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 MTSS1LQ765P7 747 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 DET1Q7L5Y6 550 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 FBXO39Q8N4B4 442 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 TXLNGQ9NUQ3 528 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 SPATS2LQ9NUQ6 558 aaKnown RBP13.6□□□□□ -0.23
PTPRF-202ENST00000372405 ADAMTS6Q9UKP5 1117 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 STON1Q9Y6Q2 735 aa13.6□□□□□ -0.23
PTPRF-202ENST00000372405 GOLGA8QA0A0J9YX86 632 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 A0A1B0GTL3 188 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 RGSL1A5PLK6 1076 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 GOLGA8OA6NCC3 632 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 SYCE1LA8MT33 242 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 GOLGA8NF8WBI6 632 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 H0Y858 1186 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 PSMD11O00231 422 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 CCDC22O60826 627 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 SNUPNO95149 360 aaKnown RBP13.59□□□□□ -0.23
PTPRF-202ENST00000372405 SOD1P00441 154 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 ATP1B2P14415 290 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-202ENST00000372405 EPHA3P29320 983 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 EEF1DP29692 281 aaKnown RBP13.59□□□□□ -0.23
PTPRF-202ENST00000372405 PSMD8P48556 350 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 SH3BP2P78314 561 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 KRT72Q14CN4 511 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 ACOX1Q15067 660 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 TGFBIQ15582 683 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 PDCD2Q16342 344 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-202ENST00000372405 AAK1Q2M2I8 961 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 GPSM1Q86YR5 675 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 DDHD1Q8NEL9 900 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 DLG3Q92796 817 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 DTD2Q96FN9 168 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 TRMOQ9BU70 441 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 ZSCAN5AQ9BUG6 496 aa13.59□□□□□ -0.23
PTPRF-202ENST00000372405 UTP6Q9NYH9 597 aaKnown RBP13.59□□□□□ -0.23
PTPRF-202ENST00000372405 PRR5-ARHGAP8B1AHC4 643 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 NEMP1O14524 444 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 WNT9AO14904 365 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 CDK14O94921 469 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 RPS17P08708 135 aaKnown RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 P2RY2P41231 377 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 KIR2DL1P43626 348 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 ARHGAP8P85298 464 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 CNTN1Q12860 1018 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 C2orf27AQ580R0 203 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 ERN2Q76MJ5 926 aaKnown RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 C10orf67Q8IYJ2 551 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 BTN2A2Q8WVV5 523 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 AP2M1Q96CW1 435 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 C1QTNF3Q9BXJ4 246 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 ARHGEF3Q9NR81 526 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 VTI1BQ9UEU0 232 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 DOCK9Q9BZ29 2069 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 E9PBE3 544 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 SLCO1B7G3V0H7 640 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 H3BQ06 376 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 STX16-NPEPL1H3BU86 382 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 STX16O14662 325 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 KLHL41O60662 606 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 MMP20O60882 483 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 ATP5HO75947 161 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 POU3F3P20264 500 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 DGKAP23743 735 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 AOAHP28039 575 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 AKT1P31749 480 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms