RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 C2orf78A6NCI8 922 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ZNF840PA6NDX5 716 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TRIM64BA6NI03 449 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 C5orf67F2Z3F1 127 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SYN3O14994 580 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 NPC1O15118 1278 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 BIRC5O15392 142 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC7A4O43246 635 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PRAMEF11O60813 436 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 OPHN1O60890 802 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ATP6V1G2O95670 118 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ITGA2BP08514 1039 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ALDOCP09972 364 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 HSPA1AP0DMV8 641 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 HSPA1BP0DMV9 641 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 PNLIPP16233 465 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FDXRP22570 491 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ACVRL1P37023 503 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PBX3P40426 434 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PAPOLAP51003 745 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 GZMMP51124 257 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SESN3P58005 492 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 DEFB103AP81534 67 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CYP4F8P98187 520 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PFKPQ01813 784 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC10A7Q0GE19 358 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 GPR162Q16538 588 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CDO1Q16878 200 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 UAP1L1Q3KQV9 507 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 USP41Q3LFD5 358 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 KRT71Q3SY84 523 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TECRLQ5HYJ1 363 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 EFHC1Q5JVL4 640 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ATAT1Q5SQI0 421 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 C6orf10Q5SRN2 563 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SDHAF4Q5VUM1 108 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 OGFOD2Q6N063 350 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FBXL22Q6P050 247 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ERAP2Q6P179 960 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 GALNT18Q6P9A2 607 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 RNF165Q6ZSG1 346 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TTLL10Q6ZVT0 673 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TAX1BP1Q86VP1 789 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC26A11Q86WA9 606 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 MYLK4Q86YV6 388 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 KLHDC8AQ8IYD2 350 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 NLGN4XQ8N0W4 816 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC39A11Q8N1S5 342 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 LILRA3Q8N6C8 439 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 KCTD6Q8NC69 237 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CFAP61Q8NHU2 1237 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CCHCR1Q8TD31 782 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SEPT8Q92599 483 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TOP1MTQ969P6 601 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 RSPRY1Q96DX4 576 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 HMCESQ96FZ2 354 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 DUS3LQ96G46 650 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 FCRL1Q96LA6 429 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ZNF560Q96MR9 790 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PLEKHG4BQ96PX9 1271 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PANX3Q96QZ0 392 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ATOH8Q96SQ7 321 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TMEM175Q9BSA9 504 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TACO1Q9BSH4 297 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC2A11Q9BYW1 496 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TRABDQ9H4I3 376 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TAS2R1Q9NYW7 299 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 OR12D3Q9UGF7 316 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CD300AQ9UGN4 299 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CDYLQ9Y232 598 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 GINS2Q9Y248 185 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 USP15Q9Y4E8 981 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 PCDHGB3Q9Y5G1 929 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PCYT1BQ9Y5K3 369 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 DMXL2Q8TDJ6 3036 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 KCNE1BA0A087WTH5 132 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 A0A0U1RQS6 177 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FITM1A5D6W6 292 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 M0QYT0 321 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FXYD1O00168 92 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PPP6CO00743 305 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TRIM24O15164 1050 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 COCHO43405 550 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 LYPLA1O75608 230 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 STC2O76061 302 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ZWINTO95229 277 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PAPSS2O95340 614 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 PENKP01210 267 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 C8BP07358 591 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 KRT19P08727 400 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TPBGLP0DKB5 382 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ERVK-10P10266 1014 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 HNRNPLP14866 589 aaKnown RBP eCLIP2.31□□□□□ -2.045e-9■■■□□ 16.9
VPS54-202ENST00000354504 BRAFP15056 766 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PGAM1P18669 254 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 HDCP19113 662 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PAX3P23760 479 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FCARP24071 287 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC1A2P43004 574 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TNNT3P45378 269 aaPredicted RBP2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms