RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CERS6Q6ZMG9 384 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF687Q8N1G0 1237 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 RNASE11Q8TAA1 199 aaKnown RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 GFM2Q969S9 779 aaKnown RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 AMDHD1Q96NU7 426 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 CASD1Q96PB1 797 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 SH3GL3Q99963 347 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF226Q9NYT6 803 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 MCM8Q9UJA3 840 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 EPN1Q9Y6I3 576 aaPredicted RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 TRAV17A0A0B4J275 112 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 FAM149AA5PLN7 773 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 IGLON5A6NGN9 336 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 MAP3K6O95382 1288 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 SRYQ05066 204 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 LRP8Q14114 963 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF234Q14588 700 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 FIP1L1Q6UN15 594 aaKnown RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 LRRC8CQ8TDW0 803 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 IPCEF1Q8WWN9 437 aaPredicted RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 SERPINB12Q96P63 405 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 LENG8Q96PV6 779 aaPredicted RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 SERPINI1Q99574 410 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 TRMOQ9BU70 441 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 OR8D2Q9GZM6 311 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 NECTIN3Q9NQS3 549 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 FGFR1OP2Q9NVK5 253 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 SLC5A6Q9Y289 635 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ABCA4P78363 2273 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 MAGEB16A2A368 324 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 GABRR3A8MPY1 467 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 ARL2P36404 184 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 NIPAL4Q0D2K0 466 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 LRRC23Q53EV4 343 aaPredicted RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 C9orf64Q5T6V5 341 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 OGFOD2Q6N063 350 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF585AQ6P3V2 769 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 DENND6AQ8IWF6 608 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 ARFGAP1Q8N6T3 406 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 FNIP1Q8TF40 1166 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 ZSWIM3Q96MP5 696 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 RIOK2Q9BVS4 552 aaKnown RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 SCNM1Q9BWG6 230 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 OLAHQ9NV23 265 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CHKBQ9Y259 395 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 SH3BGRLO75368 114 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 POP7O75817 140 aaKnown RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 GSTT2P0CG29 244 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 GSTT2BP0CG30 244 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 MPSTP25325 297 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CASP7P55210 303 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 LAPTM5Q13571 262 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 ARL9Q6T311 187 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 VSIG1Q86XK7 387 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 UBQLNLQ8IYU4 475 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM161BQ8NDZ6 487 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 FAM81AQ8TBF8 368 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 SFXN2Q96NB2 322 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 TUBB6Q9BUF5 446 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CDADC1Q9BWV3 514 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 PCDH18Q9HCL0 1135 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CHST11Q9NPF2 352 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 MKKSQ9NPJ1 570 aaPredicted RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 PCDHGC5Q9Y5F6 944 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 FAM186AA6NE01 2351 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CASQ2O14958 399 aaPredicted RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 LATS1O95835 1130 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 FMO4P31512 558 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CYP4F2P78329 520 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CNGA3Q16281 694 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 LRRC73Q5JTD7 316 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 KCTD18Q6PI47 426 aaPredicted RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 TRPV1Q8NER1 839 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 RFFLQ8WZ73 363 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 TBL1YQ9BQ87 522 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 PRRG3Q9BZD7 231 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 ENAMQ9NRM1 1142 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 SEMA3GQ9NS98 782 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 PIH1D1Q9NWS0 290 aaKnown RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 TBK1Q9UHD2 729 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 MRC1P22897 1456 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 ESYT3A0FGR9 886 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 DRGXA6NNA5 263 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 PEX1O43933 1283 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CPA3P15088 417 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 SERPINB4P48594 390 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CAV1Q03135 178 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 BCORP1Q8N888 145 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 ADAD1Q96M93 576 aaKnown RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 PPP1R10Q96QC0 940 aaKnown RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 PELOQ9BRX2 385 aaKnown RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 FUT8Q9BYC5 575 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 FZD8Q9H461 694 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 SMOC1Q9H4F8 434 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 EIF3KQ9UBQ5 218 aaKnown RBP8.31□□□□□ -1.08
HMGB1-203ENST00000341423 FZD10Q9ULW2 581 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 CHMP2BQ9UQN3 213 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 SCML2Q9UQR0 700 aa8.31□□□□□ -1.08
HMGB1-203ENST00000341423 KNL1Q8NG31 2342 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms