RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DNAJC11Q9NVH1 559 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 IQGAP3Q86VI3 1631 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 NCOA3Q9Y6Q9 1424 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 hCG_2039718K7EN88 272 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 SNX3O60493 162 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 RGS8P57771 180 aaPredicted RBP12.52□□□□□ -0.41
SDC3-201ENST00000336798 TXNL4AP83876 142 aaKnown RBP12.52□□□□□ -0.41
SDC3-201ENST00000336798 PTGES3Q15185 160 aaKnown RBP12.52□□□□□ -0.41
SDC3-201ENST00000336798 TMPRSS9Q7Z410 1059 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 MON1AQ86VX9 555 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 C7orf57Q8NEG2 295 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 MNTQ99583 582 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 C12orf4Q9NQ89 552 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 RSL24D1Q9UHA3 163 aaKnown RBP12.52□□□□□ -0.41
SDC3-201ENST00000336798 ZNF510Q9Y2H8 683 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 SERPINA6P08185 405 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 CMPK1P30085 196 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 SLC5A3P53794 718 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 ZNF460Q14592 562 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 SIDT2Q8NBJ9 832 aaKnown RBP12.52□□□□□ -0.41
SDC3-201ENST00000336798 LCN9Q8WX39 176 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 ART4Q93070 314 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.52□□□□□ -0.41
SDC3-201ENST00000336798 GLOD4Q9HC38 313 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 PCDH18Q9HCL0 1135 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 CHRAC1Q9NRG0 131 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 GRIP1Q9Y3R0 1128 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 RCCD1A6NED2 376 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 ANXA4P09525 319 aaPredicted RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 ACRP10323 421 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 CLCNKBP51801 687 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 MAPK12P53778 367 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 VLDLRP98155 873 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 EVX2Q03828 476 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 SULT2A1Q06520 285 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 GLYATQ6IB77 296 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 NAPRTQ6XQN6 538 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 TMPRSS11AQ6ZMR5 421 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 UNC5BQ8IZJ1 945 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 ZNF366Q8N895 744 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 TOP1MTQ969P6 601 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 OSBPL2Q9H1P3 480 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 OR51V1Q9H2C8 321 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 PNO1Q9NRX1 252 aaKnown RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 TREHO43280 583 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 HYAL2Q12891 473 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 DIP2AQ14689 1571 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 C6orf52Q5T4I8 152 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 PIWIL4Q7Z3Z4 852 aaKnown RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 ARMC10Q8N2F6 343 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 SPATA22Q8NHS9 363 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 HERVK_113Q902F9 699 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 COQ8BQ96D53 544 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 GFM1Q96RP9 751 aaKnown RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 IFT46Q9NQC8 304 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 KCTD5Q9NXV2 234 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 RGS17Q9UGC6 210 aaPredicted RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 CEP170BQ9Y4F5 1589 aaPredicted RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 TRIM64A6NGJ6 449 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 UNC5CO95185 931 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 METTL18O95568 372 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 PRKCGP05129 697 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 CSN2P05814 226 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 MMP3P08254 477 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 SPAM1P38567 509 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 PITRM1Q5JRX3 1037 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 PPP1R15BQ5SWA1 713 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 VITQ6UXI7 678 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 METTL3Q86U44 580 aaKnown RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 ARL14EPQ8N8R7 260 aaPredicted RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 PRELID2Q8N945 189 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 FAM47BQ8NA70 645 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 TWIST2Q8WVJ9 160 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 CIB1Q99828 191 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 DPEP3Q9H4B8 488 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 KCNMB3Q9NPA1 279 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 MEGF6O75095 1541 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 KCNU1A8MYU2 1149 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 TNFRSF11BO00300 401 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 CFIP05156 583 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 IGFBP5P24593 272 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 DDX6P26196 483 aaKnown RBP eCLIP12.51□□□□□ -0.41
SDC3-201ENST00000336798 PLA2G16P53816 162 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 SLC25A52Q3SY17 297 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 UBXN11Q5T124 520 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 SLC22A15Q8IZD6 547 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 DEFB119Q8N690 84 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 ESAMQ96AP7 390 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 MALT1Q9UDY8 824 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 A0A1W2PQ72 361 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 PRAMEF1O95521 474 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 AZGP1P25311 298 aaKnown RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 ECM1Q16610 540 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 PLPPR4Q7Z2D5 763 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 BEND7Q8N7W2 519 aaPredicted RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 OR7D4Q8NG98 312 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 MCCC1Q96RQ3 725 aaPredicted RBP12.51□□□□□ -0.41
SDC3-201ENST00000336798 IPPKQ9H8X2 491 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 TBC1D17Q9HA65 648 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 TESMINQ9Y4I5 508 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms