RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ARSDP51689 593 aa15.57■□□□□ 0.08
CLN3-201ENST00000333496 HHEXQ03014 270 aa15.57■□□□□ 0.08
CLN3-201ENST00000333496 CYP1B1Q16678 543 aa15.57■□□□□ 0.08
CLN3-201ENST00000333496 BEND7Q8N7W2 519 aaPredicted RBP15.57■□□□□ 0.08
CLN3-201ENST00000333496 GRAMD1AQ96CP6 724 aa15.57■□□□□ 0.08
CLN3-201ENST00000333496 SGF29Q96ES7 293 aa15.57■□□□□ 0.08
CLN3-201ENST00000333496 ZCCHC2Q9C0B9 1178 aaKnown RBP15.57■□□□□ 0.08
CLN3-201ENST00000333496 SATB2Q9UPW6 733 aa15.57■□□□□ 0.08
CLN3-201ENST00000333496 IGHV1OR21-1A0A087WYE8 117 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 POP7O75817 140 aaKnown RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 MSH3P20585 1137 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 ITGALP20701 1170 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 RPL10P27635 214 aaKnown RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 AKT1P31749 480 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 BASP1P80723 227 aaKnown RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 CFHR1Q03591 330 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 ZFP36L1Q07352 338 aaKnown RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 AMZ1Q400G9 498 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 C3orf38Q5JPI3 329 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 C4orf22Q6V702 233 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 SYT10Q6XYQ8 523 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 PPP1R21Q6ZMI0 780 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 ZNF574Q6ZN55 896 aaPredicted RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 DET1Q7L5Y6 550 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 SLITRK4Q8IW52 837 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 NXPE1Q8N323 547 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 OR13J1Q8NGT2 312 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 ACTRT1Q8TDG2 376 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 ZNF592Q92610 1267 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 MAGOHBQ96A72 148 aaKnown RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 PRR11Q96HE9 360 aaPredicted RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 ZNF778Q96MU6 729 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 SARS2Q9NP81 518 aaKnown RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 EIF2B3Q9NR50 452 aaKnown RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 ZNF624Q9P2J8 865 aaPredicted RBP15.56■□□□□ 0.08
CLN3-201ENST00000333496 CRLS1Q9UJA2 301 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 SLC30A1Q9Y6M5 507 aa15.56■□□□□ 0.08
CLN3-201ENST00000333496 KIR2DS5A0A0G2JLQ3 304 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 A0A0G2JNG1 304 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 OR5K4A6NMS3 321 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 KIR2DS3K7RE56 304 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 PGRMC1O00264 195 aaKnown RBP15.55■□□□□ 0.08
CLN3-201ENST00000333496 CCKBRP32239 447 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 LSSP48449 732 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 DRG2P55039 364 aaKnown RBP15.55■□□□□ 0.08
CLN3-201ENST00000333496 GNG11P61952 73 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 UBE2IP63279 158 aaKnown RBP15.55■□□□□ 0.08
CLN3-201ENST00000333496 GABREP78334 506 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 DMPKQ09013 629 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 BIRC2Q13490 618 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 KIR2DS5Q14953 304 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 TRIP13Q15645 432 aaPredicted RBP15.55■□□□□ 0.08
CLN3-201ENST00000333496 SEPT7Q16181 437 aaKnown RBP15.55■□□□□ 0.08
CLN3-201ENST00000333496 GPR33Q49SQ1 333 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 ZRANB3Q5FWF4 1079 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 FNBP1LQ5T0N5 605 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 NKAIN2Q5VXU1 208 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 ABRAXAS1Q6UWZ7 409 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 XKR5Q6UX68 686 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 WASH2PQ6VEQ5 465 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 FAM83HQ6ZRV2 1179 aaPredicted RBP15.55■□□□□ 0.08
CLN3-201ENST00000333496 USP53Q70EK8 1073 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 AMZ2Q86W34 360 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 PIANPQ8IYJ0 282 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 ULK4Q96C45 1275 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 LIN37Q96GY3 246 aaPredicted RBP15.55■□□□□ 0.08
CLN3-201ENST00000333496 RANBP9Q96S59 729 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 NUDT22Q9BRQ3 303 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 POLR1BQ9H9Y6 1135 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 WASH6PQ9NQA3 447 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 CPNE7Q9UBL6 633 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 SLC2A6Q9UGQ3 507 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 WDR37Q9Y2I8 494 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 RAXQ9Y2V3 346 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 DNMT3AQ9Y6K1 912 aaPredicted RBP15.55■□□□□ 0.08
CLN3-201ENST00000333496 CACNA1BQ00975 2339 aa15.55■□□□□ 0.08
CLN3-201ENST00000333496 IGLV3-16A0A075B6K0 115 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 TCRBV7S3A2A0A539 114 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 HEATR9A2RTY3 570 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 OR51F1A6NGY5 319 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 CES2O00748 559 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 TLX3O43711 291 aaPredicted RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 CPNE6O95741 557 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 HOXB3P14651 431 aaPredicted RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 SLC2A4P14672 509 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 XRCC1P18887 633 aaPredicted RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 ADRA1DP25100 572 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 ACRV1P26436 265 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 COILP38432 576 aaPredicted RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 SLC19A1P41440 591 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 INHBCP55103 352 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 NFE2L1Q14494 772 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 CLCA4Q14CN2 919 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 SKIDA1Q1XH10 827 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 TSTD2Q5T7W7 516 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 CCDC137Q6PK04 289 aaKnown RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 ZNF534Q76KX8 674 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 SLC9B2Q86UD5 537 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 PIM3Q86V86 326 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 SERPINA9Q86WD7 417 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms