RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CD247P20963 164 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 YAP1P46937 504 aaKnown RBP14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SREBF2Q12772 1141 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SYVN1Q86TM6 617 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 OR4L1Q8NH43 312 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SLCO1B3Q9NPD5 702 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 RPS2P15880 293 aaKnown RBP14.16□□□□□ -0.14
COL7A1-201ENST00000328333 KAT2AQ92830 837 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 CHST7Q9NS84 486 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SPATA7Q9P0W8 599 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF69Q9UC07 566 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 MAGED1Q9Y5V3 778 aaPredicted RBP14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SNRNP200O75643 2136 aaKnown RBP14.16□□□□□ -0.14
COL7A1-201ENST00000328333 THOP1P52888 689 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 CERS6Q6ZMG9 384 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 TMEM27Q9HBJ8 222 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF358Q9NW07 568 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 LRRC42Q9Y546 428 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 ACOX3O15254 700 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 CTSHP09668 335 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 LINC00032P0C843 101 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 ARF3P61204 181 aaPredicted RBP14.15□□□□□ -0.14
COL7A1-201ENST00000328333 ARF1P84077 181 aaKnown RBP14.15□□□□□ -0.14
COL7A1-201ENST00000328333 KCTD19Q17RG1 926 aaPredicted RBP14.15□□□□□ -0.14
COL7A1-201ENST00000328333 ADGRD1Q6QNK2 874 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 KIF18BQ86Y91 864 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 GLT1D1Q96MS3 346 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 POP1Q99575 1024 aaKnown RBP14.15□□□□□ -0.14
COL7A1-201ENST00000328333 PCDH10Q9P2E7 1040 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 PRAMEF12O95522 483 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 TMEM62Q0P6H9 643 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 MAP4K3Q8IVH8 894 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 FITM2Q8N6M3 262 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 DPAGT1Q9H3H5 408 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 SPARCP09486 303 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 RAB12Q6IQ22 244 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 TFAP2DQ7Z6R9 452 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 OR5J2Q8NH18 312 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 BRD9Q9H8M2 597 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 SNCAIPQ9Y6H5 919 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 PRORSD1PA6NEY8 169 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 C5orf60A6NFR6 353 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 PCDHGA12O60330 932 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 ZMPSTE24O75844 475 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 THPOP40225 353 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 RGS8P57771 180 aaPredicted RBP14.15□□□□□ -0.14
COL7A1-201ENST00000328333 FAM91A1Q658Y4 838 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 CAPN13Q6MZZ7 669 aaPredicted RBP14.15□□□□□ -0.14
COL7A1-201ENST00000328333 FBXL19Q6PCT2 694 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 PHC2Q8IXK0 858 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 OR5T3Q8NGG3 340 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 RAD51AP1Q96B01 352 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 FARSAQ9Y285 508 aaKnown RBP14.15□□□□□ -0.14
COL7A1-201ENST00000328333 MYCP01106 439 aaPredicted RBP14.15□□□□□ -0.14
COL7A1-201ENST00000328333 PTP4A2Q12974 167 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 ALG10Q5BKT4 473 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 TOMM5Q8N4H5 51 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 NPAS2Q99743 824 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 RTP1P59025 263 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 TAS2R43P59537 309 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 TSPAN5P62079 268 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 TBC1D16Q8TBP0 767 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 ZSWIM3Q96MP5 696 aa14.15□□□□□ -0.14
COL7A1-201ENST00000328333 B8ZZF3 427 aa14.15□□□□□ -0.15
COL7A1-201ENST00000328333 CLDN9O95484 217 aa14.15□□□□□ -0.15
COL7A1-201ENST00000328333 CD72P21854 359 aa14.15□□□□□ -0.15
COL7A1-201ENST00000328333 LINGO2Q7L985 606 aa14.15□□□□□ -0.15
COL7A1-201ENST00000328333 SLC2A14Q8TDB8 520 aa14.15□□□□□ -0.15
COL7A1-201ENST00000328333 TKTL2Q9H0I9 626 aa14.15□□□□□ -0.15
COL7A1-201ENST00000328333 C1orf21Q9H246 121 aa14.15□□□□□ -0.15
COL7A1-201ENST00000328333 MIOSQ9NXC5 875 aa14.15□□□□□ -0.15
COL7A1-201ENST00000328333 NPHS1O60500 1241 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 NME6O75414 186 aaPredicted RBP14.14□□□□□ -0.15
COL7A1-201ENST00000328333 DNAJB1P25685 340 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 KLHL26Q53HC5 615 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 OGFRL1Q5TC84 451 aaPredicted RBP14.14□□□□□ -0.15
COL7A1-201ENST00000328333 GLYATQ6IB77 296 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 AGBL3Q8NEM8 1001 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 ITPKCQ96DU7 683 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 ASB8Q9H765 288 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 FARSBQ9NSD9 589 aaKnown RBP14.14□□□□□ -0.15
COL7A1-201ENST00000328333 EGFL7Q9UHF1 273 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 PEX11AO75192 247 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 MTHFD1P11586 935 aaKnown RBP14.14□□□□□ -0.15
COL7A1-201ENST00000328333 PRPS2P11908 318 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 S100PP25815 95 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 HTR1BP28222 390 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 AGTR1P30556 359 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 TMBIM6P55061 237 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 RPP38P78345 283 aaKnown RBP14.14□□□□□ -0.15
COL7A1-201ENST00000328333 MPPE1Q53F39 396 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 ADGRD2Q7Z7M1 963 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 AMIGO1Q86WK6 493 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 LRRN4CLQ8ND94 238 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SPOCK2Q92563 424 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 LRRC4CQ9HCJ2 640 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SLC39A1Q9NY26 324 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 FFAR3O14843 346 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 GPR42O15529 346 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 NPPAP01160 153 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms