RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CLPXO76031 633 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 C8BP07358 591 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SNRPD1P62314 119 aaKnown RBP11.41□□□□□ -0.58
VPS39-201ENST00000318006 NRG1Q02297 640 aaPredicted RBP11.41□□□□□ -0.58
VPS39-201ENST00000318006 SCRN3Q0VDG4 424 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 ANXA8L1Q5VT79 327 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 IL23RQ5VWK5 629 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 OLFML2AQ68BL7 652 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 XKR5Q6UX68 686 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 FAM92BQ6ZTR7 304 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 GPR65Q8IYL9 337 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SNX27Q96L92 541 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 COPS4Q9BT78 406 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 FNDC11Q9BVV2 318 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 GLOD4Q9HC38 313 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 ACSS2Q9NR19 701 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 RBPJLQ9UBG7 517 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 AJAP1Q9UKB5 411 aaPredicted RBP11.41□□□□□ -0.58
VPS39-201ENST00000318006 DHRS7Q9Y394 339 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 ALS2Q96Q42 1657 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 C22orf31O95567 290 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 CATP04040 527 aaKnown RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 IFI30P13284 250 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 XRCC1P18887 633 aaPredicted RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 ABL2P42684 1182 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 OMPP47874 163 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 PLEKHG6Q3KR16 790 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 PIK3R6Q5UE93 754 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 SULT1C3Q6IMI6 304 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 SLC25A24Q6NUK1 477 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 TMEM53Q6P2H8 277 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 SLC22A16Q86VW1 577 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 RASAL3Q86YV0 1011 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 MPP5Q8N3R9 675 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 ZNF655Q8N720 491 aaPredicted RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 TTC29Q8NA56 475 aaPredicted RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 KCTD15Q96SI1 283 aaPredicted RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 TM6SF2Q9BZW4 377 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 TRAV19A0A0A6YYK7 116 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 A0A0G2JPF8 293 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 FABP12A6NFH5 140 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 HNRNPCL3B7ZW38 293 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 ITM2AO43736 263 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 MFSD11O43934 449 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 MPZL2O60487 215 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 SNX4O95219 450 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 FGF1P05230 155 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 HNRNPCL4P0DMR1 293 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 SMAD3P84022 425 aaKnown RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 SEMA5AQ13591 1074 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 GNA13Q14344 377 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 CYP2A13Q16696 494 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 FAM220AQ7Z4H9 259 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 DSG4Q86SJ6 1040 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 STX12Q86Y82 276 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 IPCEF1Q8WWN9 437 aaPredicted RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 ERMAPQ96PL5 475 aaPredicted RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 KCNS3Q9BQ31 491 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 LIN28AQ9H9Z2 209 aaKnown RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 SUCOQ9UBS9 1254 aaKnown RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 ILVBLA1L0T0 632 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 ZNF879B4DU55 563 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 H0YGN5 161 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 CHST10O43529 356 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 NPHS1O60500 1241 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 TBL1XO60907 577 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 RLN1P04808 185 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 PABPC4LP0CB38 370 aaKnown RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 CD36P16671 472 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 BMP7P18075 431 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 LILRA4P59901 499 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 PAOXQ6QHF9 649 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 SLC24A5Q71RS6 500 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 HJURPQ8NCD3 748 aaPredicted RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 WDR48Q8TAF3 677 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 NDRG1Q92597 394 aaKnown RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 HNRNPABQ99729 332 aaKnown RBP11.4□□□□□ -0.58
VPS39-201ENST00000318006 SYT17Q9BSW7 474 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 PCDHAC1Q9H158 963 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 ZDHHC6Q9H6R6 413 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 SYNDIG1Q9H7V2 258 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 NFS1Q9Y697 457 aa11.4□□□□□ -0.58
VPS39-201ENST00000318006 TRPM3Q9HCF6 1732 aaPredicted RBP11.39□□□□□ -0.59
VPS39-201ENST00000318006 C2CD4BA6NLJ0 364 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 KLF11O14901 512 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 VNN1O95497 513 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 PIGRP01833 764 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 PIRTP0C851 137 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 RAP2AP10114 183 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 AOC1P19801 751 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 SMARCB1Q12824 385 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 DAG1Q14118 895 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 GRM3Q14832 879 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ZNF420Q8TAQ5 688 aaPredicted RBP11.39□□□□□ -0.59
VPS39-201ENST00000318006 FNDC8Q8TC99 324 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 GPR152Q8TDT2 470 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ATL1Q8WXF7 558 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 DNAJB9Q9UBS3 223 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ZNF232Q9UNY5 417 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ENTPD4Q9Y227 616 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms