RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 MED28Q9H204 178 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 GULP1Q9UBP9 304 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 PFDN2Q9UHV9 154 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 ARPC2O15144 300 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 TP73O15350 636 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 RGS20O76081 388 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 CXCR3P49682 368 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 CDH15P55291 814 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 HERVK_113P63132 956 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 MOGSQ13724 837 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 RFTN2Q52LD8 501 aaPredicted RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 DAW1Q8N136 415 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 LIX1Q8N485 282 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 TCF25Q9BQ70 676 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 TINF2Q9BSI4 451 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 ERVK-6Q9BXR3 956 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 SGK2Q9HBY8 427 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 STARD7Q9NQZ5 370 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 PCDHGA10Q9Y5H3 936 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 IRAK3Q9Y616 596 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MSI1O43347 362 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MT-CYBP00156 380 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 YBEYP58557 167 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 TAS2R41P59536 307 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 FOXM1Q08050 763 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MSS51Q4VC12 460 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 DOK6Q6PKX4 331 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 LRRC58Q96CX6 371 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MYO19Q96H55 970 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 GPN1Q9HCN4 374 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MCUBQ9NWR8 336 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MAN2B2Q9Y2E5 1009 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 GOT2P00505 430 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 COL6A1P12109 1028 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 OGNP20774 298 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 DNAJB1P25685 340 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 DSC2Q02487 901 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 SGCGQ13326 291 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MBLAC2Q68D91 279 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 TPGS1Q6ZTW0 290 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 OR8H1Q8NGG4 311 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ZNF516Q92618 1163 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 PIGUQ9H490 435 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 AGRPO00253 132 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 IFNW1P05000 195 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MTHFD1P11586 935 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 PRKCHP24723 683 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 GPD2P43304 727 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ATN1P54259 1190 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 GNA12Q03113 381 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 HSF2Q03933 536 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 SH3PXD2AQ5TCZ1 1133 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ZDHHC20Q5W0Z9 365 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 DRAXINQ8NBI3 349 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 EXD2Q9NVH0 621 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 PSIP1O75475 530 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 FAUP35544 74 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MANFP55145 182 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 OR2B6P58173 313 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ERVK-8P63133 956 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 CMPK2Q5EBM0 449 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 FBXL19Q6PCT2 694 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 CCDC36Q8IYA8 594 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 PHTF2Q8N3S3 785 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 GLIS1Q8NBF1 620 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ARRDC4Q8NCT1 418 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 C12orf43Q96C57 262 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 NFKBIZQ9BYH8 718 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 TFB2MQ9H5Q4 396 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ZNF395Q9H8N7 513 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ZBTB26Q9HCK0 441 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 TRPV5Q9NQA5 729 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 FBXW11Q9UKB1 542 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 AFDNP55196 1824 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 A0A1W2PQH9 124 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 GPR25O00155 361 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 GABRDO14764 452 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 CLDN11O75508 207 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 CYP11A1P05108 521 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 AZGP1P25311 298 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ICAM3P32942 547 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MTPNP58546 118 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 SNAPC1Q16533 368 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 THOC7Q6I9Y2 204 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ERMP1Q7Z2K6 904 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 PEG10Q86TG7 708 aaKnown RBP12.72□□□□□ -0.37
COL3A1-201ENST00000304636 EGFL6Q8IUX8 553 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 HID1Q8IV36 788 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ZFYVE1Q9HBF4 777 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 XPNPEP1Q9NQW7 623 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 MIOSQ9NXC5 875 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 COL20A1Q9P218 1284 aa12.72□□□□□ -0.37
COL3A1-201ENST00000304636 ABCC6O95255 1503 aa12.71□□□□□ -0.37
COL3A1-201ENST00000304636 PDLIM1O00151 329 aa12.71□□□□□ -0.37
COL3A1-201ENST00000304636 ORC5O43913 435 aa12.71□□□□□ -0.37
COL3A1-201ENST00000304636 TLR5O60602 858 aa12.71□□□□□ -0.37
COL3A1-201ENST00000304636 CD36P16671 472 aa12.71□□□□□ -0.37
COL3A1-201ENST00000304636 CYP3A5P20815 502 aa12.71□□□□□ -0.37
COL3A1-201ENST00000304636 BEX3Q00994 111 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms