RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 PTPN4P29074 926 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 HNRNPA1L2Q32P51 320 aaKnown RBP14.09□□□□□ -0.15
C9orf3-202ENST00000297979 DPPA4Q7L190 304 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 HSD11B1LQ7Z5J1 315 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 KIRREL3Q8IZU9 778 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 NAT14Q8WUY8 206 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 FAR2Q96K12 515 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 PLA2G2FQ9BZM2 168 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 CD84Q9UIB8 345 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 PRR5-ARHGAP8B1AHC4 643 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 TMEM233B4DJY2 109 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 RASSF9O75901 435 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 SLC25A14O95258 325 aaPredicted RBP14.09□□□□□ -0.15
C9orf3-202ENST00000297979 TRIM16O95361 564 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 ENO1P06733 434 aaKnown RBP14.09□□□□□ -0.15
C9orf3-202ENST00000297979 ITGB6P18564 788 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 AOC1P19801 751 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 OPRD1P41143 372 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 DCDC1P59894 354 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 ARHGAP8P85298 464 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 RALGDSQ12967 914 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 ADAM15Q13444 863 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 METTL21CQ5VZV1 264 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 ACAD11Q709F0 780 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 PARS2Q7L3T8 475 aaKnown RBP14.09□□□□□ -0.15
C9orf3-202ENST00000297979 RAB3IPQ96QF0 476 aaPredicted RBP14.09□□□□□ -0.15
C9orf3-202ENST00000297979 OR52B2Q96RD2 323 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 KXD1Q9BQD3 176 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 RAD18Q9NS91 495 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 WDR70Q9NW82 654 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 SPATA7Q9P0W8 599 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 TMCO1Q9UM00 188 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 CDYLQ9Y232 598 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 TMEM98Q9Y2Y6 226 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 TRPC5OSA6NMA1 111 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 KPNA3O00505 521 aaPredicted RBP14.08□□□□□ -0.16
C9orf3-202ENST00000297979 NEMP1O14524 444 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 SIX3O95343 332 aaPredicted RBP14.08□□□□□ -0.16
C9orf3-202ENST00000297979 HLA-EP13747 358 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 PSMC3P17980 439 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 ENPP1P22413 925 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 GJA4P35212 333 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 ZNF234Q14588 700 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 C9orf64Q5T6V5 341 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 FBXW10Q5XX13 1052 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 ERAP2Q6P179 960 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 SFTPA1Q8IWL2 248 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 UCMAQ8WVF2 138 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 OR8D1Q8WZ84 308 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 ASB2Q96Q27 587 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 SPATA16Q9BXB7 569 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 WDR55Q9H6Y2 383 aaPredicted RBP14.08□□□□□ -0.16
C9orf3-202ENST00000297979 CLEC1BQ9P126 229 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 TAGLN3Q9UI15 199 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 PLXNA2O75051 1894 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 IGLV3-16A0A075B6K0 115 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 GOLGA8QA0A0J9YX86 632 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 GOLGA8OA6NCC3 632 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 TBC1D3BA6NDS4 549 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 E9PBE3 544 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 GOLGA8NF8WBI6 632 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 KLK8O60259 260 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 KLHL41O60662 606 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 KRT16P08779 473 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 NCF2P19878 526 aaPredicted RBP14.08□□□□□ -0.16
C9orf3-202ENST00000297979 MMP12P39900 470 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 RGS4P49798 205 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 GPSM1Q86YR5 675 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 ZBTB2Q8N680 514 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 ELSPBP1Q96BH3 223 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 PPP1R36Q96LQ0 422 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 TMEM245Q9H330 911 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 FAM83DQ9H4H8 585 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 SMOXQ9NWM0 555 aa14.08□□□□□ -0.16
C9orf3-202ENST00000297979 NFKBIL1Q9UBC1 381 aaPredicted RBP14.08□□□□□ -0.16
C9orf3-202ENST00000297979 STX16-NPEPL1H3BU86 382 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 STX16O14662 325 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 JUNP05412 331 aaKnown RBP14.07□□□□□ -0.16
C9orf3-202ENST00000297979 EPHA3P29320 983 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 EEF1DP29692 281 aaKnown RBP14.07□□□□□ -0.16
C9orf3-202ENST00000297979 SESN3P58005 492 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 ELF3P78545 371 aaPredicted RBP14.07□□□□□ -0.16
C9orf3-202ENST00000297979 ELAVL3Q14576 367 aaKnown RBP14.07□□□□□ -0.16
C9orf3-202ENST00000297979 SERPINA13PQ6UXR4 307 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 Q6ZVL8 140 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 TDHQ8IZJ6 230 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 TMIEQ8NEW7 156 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 CCDC28BQ9BUN5 200 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 S1PR5Q9H228 398 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 TNFRSF12AQ9NP84 129 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 SPATS2LQ9NUQ6 558 aaKnown RBP14.07□□□□□ -0.16
C9orf3-202ENST00000297979 SARDHQ9UL12 918 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 TCF20Q9UGU0 1960 aaKnown RBP14.07□□□□□ -0.16
C9orf3-202ENST00000297979 EME2A4GXA9 379 aaPredicted RBP14.07□□□□□ -0.16
C9orf3-202ENST00000297979 LRRC14BA6NHZ5 514 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 UBFD1O14562 309 aaKnown RBP14.07□□□□□ -0.16
C9orf3-202ENST00000297979 DGKAP23743 735 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 ETV3P41162 512 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 B4GALNT1Q00973 533 aa14.07□□□□□ -0.16
C9orf3-202ENST00000297979 RBBP5Q15291 538 aaKnown RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms