RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 HTR6P50406 440 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 PLA2G4EQ3MJ16 856 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 TIGD2Q4W5G0 525 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 SERPINA9Q86WD7 417 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 MFN1Q8IWA4 741 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 HJURPQ8NCD3 748 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 RIN3Q8TB24 985 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 DDI1Q8WTU0 396 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 ALG14Q96F25 216 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 TRMT2BQ96GJ1 504 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 TMEM169Q96HH4 297 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 TMEM74Q96NL1 305 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 PIF1Q9H611 641 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 GID8Q9NWU2 228 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 HACD3Q9P035 362 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 PRSS21Q9Y6M0 314 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 C1orf232A0A0U1RR37 186 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 SLC22A3O75751 556 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 PGLSO95336 258 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 TRIM16O95361 564 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 CLDN7O95471 211 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 CNPP09543 421 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 IL12AP29459 219 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 CA8P35219 290 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 AAK1Q2M2I8 961 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 TPGS2Q68CL5 300 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 OGFOD2Q6N063 350 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 TPGS1Q6ZTW0 290 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 SPATA19Q7Z5L4 167 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 EFHD1Q9BUP0 239 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 STOML2Q9UJZ1 356 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 USP22Q9UPT9 525 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 DHRS7Q9Y394 339 aa18.13■□□□□ 0.49
SHKBP1-201ENST00000291842 A0A1W2PP18 115 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 TYW5A2RUC4 315 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 SAC3D1A6NKF1 404 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 GAPDHSO14556 408 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 SYNCRIPO60506 623 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 CXCL10P02778 98 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 CAPN1P07384 714 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 NCK1P16333 377 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 HSPA13P48723 471 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 CYP4F8P98187 520 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 TBCELQ5QJ74 424 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 C6orf136Q5SQH8 315 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 Q6ZSR9 355 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 METTL6Q8TCB7 284 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 ZNF296Q8WUU4 475 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 C17orf80Q9BSJ5 609 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 NUSAP1Q9BXS6 441 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 CLPBQ9H078 707 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 NSUN3Q9H649 340 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 ASB8Q9H765 288 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 GPBP1L1Q9HC44 474 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 MAGEE1Q9HCI5 957 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 ZMYM5Q9UJ78 669 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 BNIP3LO60238 219 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 CLPTM1O96005 669 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 FAM58BPP0C7Q3 252 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 PABPC4LP0CB38 370 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 OXTRP30559 389 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 RCAN2Q14206 197 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 IL27RAQ6UWB1 636 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 SBSNQ6UWP8 590 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 ZNF783Q6ZMS7 281 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 GOLGA7Q7Z5G4 137 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 ZFYVE1Q9HBF4 777 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 PCDHA9Q9Y5H5 950 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 INSL5Q9Y5Q6 135 aa18.12■□□□□ 0.49
SHKBP1-201ENST00000291842 CCDC154A6NI56 674 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 SOCS2O14508 198 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 TFAP2AP05549 437 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 PSMC3P17980 439 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 POLR2JP52435 117 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 EPHB3P54753 998 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 PABPC1LQ4VXU2 614 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 PRMT9Q6P2P2 845 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 ZBTB49Q6ZSB9 765 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 STK40Q8N2I9 435 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 GALNT15Q8N3T1 639 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 SFRP1Q8N474 314 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 TMEM125Q96AQ2 219 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 DUS3LQ96G46 650 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 ZNF597Q96LX8 424 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 APOL5Q9BWW9 433 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 GRIP2Q9C0E4 1043 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 ABCG8Q9H221 673 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 TLR9Q9NR96 1032 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 INTS7Q9NVH2 962 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 CNOT11Q9UKZ1 510 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 DHRS12A0PJE2 317 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 PDLIM1O00151 329 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 ARPC2O15144 300 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 TNFAIP8O95379 198 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 CD9P21926 228 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 GDF5P43026 501 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 HSPA7P48741 367 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 ADARP55265 1226 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 ERVK-8P63133 956 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 PLIN5Q00G26 463 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms