RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 VPS4BO75351 444 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 UGT1A6P19224 532 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 UGT1A1P22309 533 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 UGT1A4P22310 534 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 UGT1A3P35503 534 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 UGT1A5P35504 534 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 PAGE3Q5JUK9 113 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 PTRHD1Q6GMV3 140 aaKnown RBP19.82■□□□□ 0.76
VPS53-201ENST00000291074 SBSNQ6UWP8 590 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 TPGS1Q6ZTW0 290 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 MINDY1Q8N5J2 469 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 OR2T34Q8NGX1 318 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 OR2T3Q8NH03 318 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 DNAJB14Q8TBM8 379 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 PBXIP1Q96AQ6 731 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 CIB1Q99828 191 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 HOPXQ9BPY8 73 aaPredicted RBP19.82■□□□□ 0.76
VPS53-201ENST00000291074 COMMD10Q9Y6G5 202 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 ZFC3H1O60293 1989 aaKnown RBP19.82■□□□□ 0.76
VPS53-201ENST00000291074 GOLGA8CPA6NN73 597 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 CLDN7O95471 211 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 CASP2P42575 452 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 POLE2P56282 527 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 AP1S1P61966 158 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 DEFB103AP81534 67 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 MYBPC1Q00872 1141 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 RABL3Q5HYI8 236 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 HABP4Q5JVS0 413 aaKnown RBP19.82■□□□□ 0.76
VPS53-201ENST00000291074 THEMIS2Q5TEJ8 643 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 SPATA19Q7Z5L4 167 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 SPPL2CQ8IUH8 684 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 STK40Q8N2I9 435 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 RIN3Q8TB24 985 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 PPWD1Q96BP3 646 aaKnown RBP19.82■□□□□ 0.76
VPS53-201ENST00000291074 SLC29A1Q99808 456 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 C17orf80Q9BSJ5 609 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 ASB8Q9H765 288 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 ZFYVE1Q9HBF4 777 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 SLAMF8Q9P0V8 285 aa19.82■□□□□ 0.76
VPS53-201ENST00000291074 GUCA1CO95843 209 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 HSPA8P11142 646 aaKnown RBP19.81■□□□□ 0.76
VPS53-201ENST00000291074 CA8P35219 290 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 PPP3CCP48454 512 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 NFYCQ13952 458 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 RCAN2Q14206 197 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 PABPC1LQ4VXU2 614 aaKnown RBP19.81■□□□□ 0.76
VPS53-201ENST00000291074 BBS7Q8IWZ6 715 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 ZNF382Q96SR6 550 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 HERC2P3Q9BVR0 1158 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 CLPBQ9H078 707 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 NUDT4Q9NZJ9 180 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 DENND4CQ5VZ89 1909 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 AP1G1O43747 822 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 KATNA1O75449 491 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 CAPN1P07384 714 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 GJA1P17302 382 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 GABRR2P28476 465 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 IL12AP29459 219 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 KCNK10P57789 538 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 TIGD2Q4W5G0 525 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 C6orf136Q5SQH8 315 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 IYDQ6PHW0 289 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 Q6ZSR9 355 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 SATL1Q86VE3 508 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 IFNEQ86WN2 208 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 ZSWIM9Q86XI8 627 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 TCEAL8Q8IYN2 117 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 NUDT8Q8WV74 236 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 DUS3LQ96G46 650 aaKnown RBP19.81■□□□□ 0.76
VPS53-201ENST00000291074 CENPKQ9BS16 269 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 PAK6Q9NQU5 681 aaPredicted RBP19.81■□□□□ 0.76
VPS53-201ENST00000291074 TLR9Q9NR96 1032 aa19.81■□□□□ 0.76
VPS53-201ENST00000291074 A0A1W2PP18 115 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 TEX28O15482 410 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 STAMBPO95630 424 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 LATS1O95835 1130 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 OLFM2O95897 454 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 CKMP06732 381 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 CNPP09543 421 aaKnown RBP19.8■□□□□ 0.76
VPS53-201ENST00000291074 CKMT2P17540 419 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 BCL2L1Q07817 233 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 GAREM2Q75VX8 874 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 GOLGA7Q7Z5G4 137 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 HS6ST3Q8IZP7 471 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 FNDC5Q8NAU1 212 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 RPL10LQ96L21 214 aaKnown RBP19.8■□□□□ 0.76
VPS53-201ENST00000291074 C2orf49Q9BVC5 232 aaPredicted RBP19.8■□□□□ 0.76
VPS53-201ENST00000291074 NSUN3Q9H649 340 aaKnown RBP19.8■□□□□ 0.76
VPS53-201ENST00000291074 IL26Q9NPH9 171 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 GID8Q9NWU2 228 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 AURKCQ9UQB9 309 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 TRIM16O95361 564 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 TRBC1P01850 177 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 CD70P32970 193 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 HNF1BP35680 557 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 LMAN2Q12907 356 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 FUT11Q495W5 492 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 PRMT9Q6P2P2 845 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 SLC39A5Q6ZMH5 540 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 ANKRD33Q7Z3H0 272 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms