RNA–Protein interactions for RNA: ENST00000279247.10

CAPN1-201, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,007 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-201ENST00000279247 SOCS5O75159 536 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 XYLBO75191 536 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 POLR2EP19388 210 aaKnown RBP17.73■□□□□ 0.43
CAPN1-201ENST00000279247 MAPK8P45983 427 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 HSPA7P48741 367 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 RPS6KA2Q15349 733 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 UGT3A2Q3SY77 523 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 ARSIQ5FYB1 569 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 ZNF648Q5T619 568 aaPredicted RBP17.73■□□□□ 0.43
CAPN1-201ENST00000279247 LRRC74BQ6ZQY2 392 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 EFCAB1Q9HAE3 211 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 ZMYM5Q9UJ78 669 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 HS3ST2Q9Y278 367 aa17.73■□□□□ 0.43
CAPN1-201ENST00000279247 GBF1Q92538 1859 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 LEFTY1O75610 366 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 ACRV1P26436 265 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 AKT1P31749 480 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 PTSQ03393 145 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 COL13A1Q5TAT6 717 aaPredicted RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 BNC2Q6ZN30 1099 aaPredicted RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 PELI3Q8N2H9 469 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 RPL26L1Q9UNX3 145 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 YBX2Q9Y2T7 364 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 DHRS7Q9Y394 339 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 NR5A2O00482 541 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 ANPEPP15144 967 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 XRCC1P18887 633 aaPredicted RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 STX1BP61266 288 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 HSPA14Q0VDF9 509 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 RALGDSQ12967 914 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 CDKN3Q16667 212 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 TPRG1Q6ZUI0 275 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 GPR65Q8IYL9 337 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 SCRN2Q96FV2 425 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 NOL11Q9H8H0 719 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 STK39Q9UEW8 545 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 GNPTGQ9UJJ9 305 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 MTCL1Q9Y4B5 1905 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 POP4O95707 220 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 CCNIQ14094 377 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 PHKG1Q16816 387 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 CERS6Q6ZMG9 384 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 CPSF7Q8N684 471 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 OR2A12Q8NGT7 310 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 SMG7Q92540 1137 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 LMLNQ96KR4 655 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 SPATA16Q9BXB7 569 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 MRPL1Q9BYD6 325 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 TRIM8Q9BZR9 551 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 STX18Q9P2W9 335 aaKnown RBP17.72■□□□□ 0.43
CAPN1-201ENST00000279247 ZNF225Q9UK10 706 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 PCTPQ9UKL6 214 aa17.72■□□□□ 0.43
CAPN1-201ENST00000279247 CCNT2O60583 730 aaKnown RBP17.71■□□□□ 0.43
CAPN1-201ENST00000279247 PRDX6P30041 224 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 DIO3P55073 304 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 AP2B1P63010 937 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 ARHGEF7Q14155 803 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 C16orf89Q6UX73 402 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 LARP4Q71RC2 724 aaKnown RBP eCLIP17.71■□□□□ 0.434e-7■□□□□ 10.9
CAPN1-201ENST00000279247 CACUL1Q86Y37 369 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 MYO1HQ8N1T3 1032 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 NXPE1Q8N323 547 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 EBF3Q9H4W6 596 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 POLG2Q9UHN1 485 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 TRIOO75962 3097 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 ANTXRLA6NF34 631 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 NVLO15381 856 aaKnown RBP17.71■□□□□ 0.43
CAPN1-201ENST00000279247 PENKP01210 267 aaPredicted RBP17.71■□□□□ 0.43
CAPN1-201ENST00000279247 CASP2P42575 452 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 BOP1Q14137 746 aaKnown RBP17.71■□□□□ 0.43
CAPN1-201ENST00000279247 ZNF77Q15935 545 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 SWT1Q5T5J6 900 aaKnown RBP17.71■□□□□ 0.43
CAPN1-201ENST00000279247 GRAMD4Q6IC98 578 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 C12orf40Q86WS4 652 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.71■□□□□ 0.43
CAPN1-201ENST00000279247 VOPP1Q96AW1 172 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 RSRC1Q96IZ7 334 aaKnown RBP17.71■□□□□ 0.43
CAPN1-201ENST00000279247 CIDEBQ9UHD4 219 aa17.71■□□□□ 0.43
CAPN1-201ENST00000279247 FFAR3O14843 346 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 GPR42O15529 346 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 CEACAM7Q14002 265 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 ELMSAN1Q6PJG2 1045 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 IGFLR1Q9H665 355 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 NDE1Q9NXR1 346 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 ERVW-1Q9UQF0 538 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 PCDHB1Q9Y5F3 818 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 RPS17P08708 135 aaKnown RBP17.7■□□□□ 0.42
CAPN1-201ENST00000279247 HLA-EP13747 358 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 XPAP23025 273 aaPredicted RBP17.7■□□□□ 0.42
CAPN1-201ENST00000279247 MTTPP55157 894 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 GALNT1Q10472 559 aaPredicted RBP17.7■□□□□ 0.42
CAPN1-201ENST00000279247 SQLEQ14534 574 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 VPS26BQ4G0F5 336 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 SGO1Q5FBB7 561 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 PGM2L1Q6PCE3 622 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 GDPD4Q6W3E5 623 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 Q6ZVL8 140 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 DNAJC9Q8WXX5 260 aa17.7■□□□□ 0.42
CAPN1-201ENST00000279247 GMPR2Q9P2T1 348 aaKnown RBP17.7■□□□□ 0.42
CAPN1-201ENST00000279247 ITM2BQ9Y287 266 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms