RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 MBLAC1A4D2B0 266 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 C2orf81A6NN90 581 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 H3BNC9 293 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TPST1O60507 370 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 RAMP2O60895 175 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 DNAJB5O75953 348 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 RASAL1O95294 804 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 HLA-DQB2P05538 268 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 FGF4P08620 206 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 SERPINF2P08697 491 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 HGFP14210 728 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF26P17031 533 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CCNA2P20248 432 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 MSH3P20585 1137 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 GJA5P36382 358 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CD86P42081 329 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 ARHGDIAP52565 204 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PLK1P53350 603 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 RAD23AP54725 363 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TBX4P57082 545 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 YBEYP58557 167 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 MRPS6P82932 125 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 KCNC4Q03721 635 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TDGQ13569 410 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 Q3C1V9 767 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PARP15Q460N3 678 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 ATP6AP1LQ52LC2 224 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 GNASQ5JWF2 1037 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF678Q5SXM1 525 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 OVOS1Q6IE37 1185 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PAOXQ6QHF9 649 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 KDELC2Q7Z4H8 507 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TLK2Q86UE8 772 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 SCN4BQ8IWT1 228 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 LILRA2Q8N149 483 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 FNDC8Q8TC99 324 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CNDP2Q96KP4 475 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CDK5RAP1Q96SZ6 601 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 SLC39A8Q9C0K1 460 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PCDHAC1Q9H158 963 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CRTAC1Q9NQ79 661 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TREX1Q9NSU2 369 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 ZIM2Q9NZV7 527 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 WARS2Q9UGM6 360 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 EIF3LQ9Y262 564 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 SH3PXD2BA1X283 911 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 FAM221BA6H8Z2 402 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TMEM233B4DJY2 109 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TARM1B6A8C7 271 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 E5RI56 91 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 ARPC2O15144 300 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CD3EAPO15446 510 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PEX10O60683 326 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 SLC22A3O75751 556 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 MT-CYBP00156 380 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 IGHA2P01877 340 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 UROSP10746 265 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TYMPP19971 482 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 AKT1P31749 480 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 GALK1P51570 392 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CCR3P51677 355 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PITX1P78337 314 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CTAG1AP78358 180 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CDKL1Q00532 357 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PRKG2Q13237 762 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 OLIG2Q13516 323 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PFKFB4Q16877 469 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 RBM48Q5RL73 367 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 FAAH2Q6GMR7 532 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 UNQ6494/PRO21346Q6UXR6 183 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 RANBP10Q6VN20 620 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 IFNEQ86WN2 208 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CILP2Q8IUL8 1156 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CEP97Q8IW35 865 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 C8orf59Q8N0T1 100 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 STK40Q8N2I9 435 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 FAM156AQ8NDB6 213 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 SETD9Q8NE22 299 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 RAB2BQ8WUD1 216 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TFAP2CQ92754 450 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 HDAC10Q969S8 669 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 COX4I2Q96KJ9 171 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 C1orf74Q96LT6 269 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PAIP1Q9H074 479 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 ALG2Q9H553 416 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 BRD9Q9H8M2 597 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 GOLGA2P5Q9HBQ8 144 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 PRM3Q9NNZ6 103 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 TMPRSS4Q9NRS4 437 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 RXFP3Q9NSD7 469 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 DNAAF2Q9NVR5 837 aaKnown RBP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.95□□□□□ -1.78
SCN1A-214ENST00000637038 CD274Q9NZQ7 290 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 GMIPQ9P107 970 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 NEU3Q9UQ49 428 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 SPO11Q9Y5K1 396 aa3.95□□□□□ -1.78
SCN1A-214ENST00000637038 A0A1W2PP18 115 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 FAM234BA2RU67 622 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 MYBPHLA2RUH7 354 aa3.94□□□□□ -1.78
SCN1A-214ENST00000637038 WASH4PA8MWX3 477 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms