RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZNF284Q2VY69 593 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 TMEM52BQ4KMG9 183 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 FAM46CQ5VWP2 391 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 NRSN1Q8IZ57 195 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 PIWIL2Q8TC59 973 aaKnown RBP16.67■□□□□ 0.26
CLN3-252ENST00000636907 CCT6BQ92526 530 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 INPP5DQ92835 1189 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 EXT2Q93063 718 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 CCDC126Q96EE4 140 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 DTD2Q96FN9 168 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 TMEM237Q96Q45 408 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 RSPH9Q9H1X1 276 aaPredicted RBP16.67■□□□□ 0.26
CLN3-252ENST00000636907 NCKIPSDQ9NZQ3 722 aa16.67■□□□□ 0.26
CLN3-252ENST00000636907 CKAP5Q14008 2032 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 NPEPPSL1A6NEC2 478 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 CDC7O00311 574 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 NEMP1O14524 444 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 HGSO14964 777 aaPredicted RBP16.66■□□□□ 0.26
CLN3-252ENST00000636907 KERAO60938 352 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 SMIM24O75264 130 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 CHRNGP07510 517 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 C6P13671 934 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 SATB1Q01826 763 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 TSNQ15631 228 aaKnown RBP16.66■□□□□ 0.26
CLN3-252ENST00000636907 C2orf27AQ580R0 203 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 PIP5KL1Q5T9C9 394 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 TRIM67Q6ZTA4 783 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 RALGPS2Q86X27 583 aaPredicted RBP16.66■□□□□ 0.26
CLN3-252ENST00000636907 SLC22A9Q8IVM8 553 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 AADATQ8N5Z0 425 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 CCNYL1Q8N7R7 359 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 ZNF781Q8N8C0 355 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 STAG3L4Q8TBR4 150 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 AP2M1Q96CW1 435 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 PHF21BQ96EK2 531 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 ATXN2Q99700 1313 aaKnown RBP16.66■□□□□ 0.26
CLN3-252ENST00000636907 EYSQ5T1H1 3165 aa16.66■□□□□ 0.26
CLN3-252ENST00000636907 UBXN8O00124 270 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 BTN3A1O00481 513 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 MID1O15344 667 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 SYNCRIPO60506 623 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 MMP20O60882 483 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 MTX2O75431 263 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 RECQL5O94762 991 aaPredicted RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 ASGR2P07307 311 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 MTHFD2P13995 350 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 DRD3P35462 400 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 AQP5P55064 265 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 NFKB2Q00653 900 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 SKIV2LQ15477 1246 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 CST6Q15828 149 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 HSF5Q4G112 596 aaPredicted RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 TMEM196Q5HYL7 178 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 IER5LQ5T953 404 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 CCDC121Q6ZUS5 278 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 CYP2U1Q7Z449 544 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 YTHDF3Q7Z739 585 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 RAVER1Q8IY67 606 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 LSMEM2Q8N112 164 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 ZBTB2Q8N680 514 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 FITM2Q8N6M3 262 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 DNASE1L2Q92874 299 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 RAB7BQ96AH8 199 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 PDLIM5Q96HC4 596 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 C8orf33Q9H7E9 229 aaPredicted RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 KCNK4Q9NYG8 393 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 MBD1Q9UIS9 605 aaPredicted RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 RNF112Q9ULX5 631 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 FADS3Q9Y5Q0 445 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 LRRK1Q38SD2 2015 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 NPHS1O60500 1241 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 RNASEH1O60930 286 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 KIAA0754O94854 1291 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 TPBGLP0DKB5 382 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 NTSR1P30989 418 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 AKT1P31749 480 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 KHDC1Q4VXA5 237 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 ARL13AQ5H913 290 aaPredicted RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 KIAA1211LQ6NV74 962 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 DET1Q7L5Y6 550 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 PIWIL4Q7Z3Z4 852 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 WDR75Q8IWA0 830 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 PELI3Q8N2H9 469 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 PLCD3Q8N3E9 789 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 PTGR2Q8N8N7 351 aaPredicted RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 IL17RCQ8NAC3 791 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 DDHD1Q8NEL9 900 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 BTN2A2Q8WVV5 523 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 FUBP1Q96AE4 644 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 DCUN1D1Q96GG9 259 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 VPS35Q96QK1 796 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 GABRG3Q99928 467 aa16.65■□□□□ 0.26
CLN3-252ENST00000636907 PHF7Q9BWX1 381 aaPredicted RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 SPATS2LQ9NUQ6 558 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 TSR3Q9UJK0 312 aaKnown RBP16.65■□□□□ 0.26
CLN3-252ENST00000636907 LZTS3O60299 673 aaPredicted RBP16.64■□□□□ 0.25
CLN3-252ENST00000636907 ADAM23O75077 832 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 ADH1BP00325 375 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 OR56A5P0C7T3 313 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 ATP1B2P14415 290 aaPredicted RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms