RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 EEF1AKMT1Q8WVE0 214 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 BTN2A2Q8WVV5 523 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 FOXQ1Q9C009 403 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 C20orf27Q9GZN8 174 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 ALG9Q9H6U8 611 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 SIRPGQ9P1W8 387 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 NFKBIL1Q9UBC1 381 aaPredicted RBP19.88■□□□□ 0.77
CLN3-250ENST00000636839 MMP17Q9ULZ9 603 aa19.88■□□□□ 0.77
CLN3-250ENST00000636839 NEMP2A6NFY4 417 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 TSPAN12O95859 305 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 CD1DP15813 335 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 TFEBP19484 476 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 NSG1P42857 185 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 CREB5Q02930 508 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 GAS6Q14393 721 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 CRY1Q16526 586 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 FAM83EQ2M2I3 478 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 KIAA1324Q6UXG2 1013 aaKnown RBP19.87■□□□□ 0.77
CLN3-250ENST00000636839 CYP2U1Q7Z449 544 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 ISCA2Q86U28 154 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 BEND7Q8N7W2 519 aaPredicted RBP19.87■□□□□ 0.77
CLN3-250ENST00000636839 GLYATL1Q969I3 302 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 THOC1Q96FV9 657 aaKnown RBP19.87■□□□□ 0.77
CLN3-250ENST00000636839 TSNARE1Q96NA8 513 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 LMAN1LQ9HAT1 526 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 SMOXQ9NWM0 555 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 TRMT6Q9UJA5 497 aaKnown RBP19.87■□□□□ 0.77
CLN3-250ENST00000636839 GNPTGQ9UJJ9 305 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 PCDHB1Q9Y5F3 818 aa19.87■□□□□ 0.77
CLN3-250ENST00000636839 SGTAO43765 313 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 FGF3P11487 239 aaPredicted RBP19.86■□□□□ 0.77
CLN3-250ENST00000636839 FZD5Q13467 585 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 EOGTQ5NDL2 527 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 RAET1GQ6H3X3 334 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 MACC1Q6ZN28 852 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 ULK4Q96C45 1275 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 SORCS3Q9UPU3 1222 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 OR2AG2A6NM03 316 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 MAN2B1O00754 1011 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 TSPAN6O43657 245 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 AP1G1O43747 822 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 PAK4O96013 591 aaPredicted RBP19.86■□□□□ 0.77
CLN3-250ENST00000636839 ATP1B2P14415 290 aaPredicted RBP19.86■□□□□ 0.77
CLN3-250ENST00000636839 GABRG2P18507 467 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 ADPRHP54922 357 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 ITIH4Q14624 930 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 UBXN2BQ14CS0 331 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 OR4D1Q15615 310 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 TECRLQ5HYJ1 363 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 AGAP9Q5VTM2 703 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 CGB2Q6NT52 195 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 HMGB4Q8WW32 186 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 CDH19Q9H159 772 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 POPDC3Q9HBV1 291 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 RAD18Q9NS91 495 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 DHRS7Q9Y394 339 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 TRPM6Q9BX84 2022 aa19.86■□□□□ 0.77
CLN3-250ENST00000636839 CDC7O00311 574 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 DLX3O60479 287 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 FAM107AO95990 144 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 PYGLP06737 847 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 MAT2AP31153 395 aaKnown RBP19.85■□□□□ 0.77
CLN3-250ENST00000636839 ARRB2P32121 409 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 GPR1P46091 355 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 BST1Q10588 318 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 WSCD2Q2TBF2 565 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 RGS9BPQ6ZS82 235 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 CPLX4Q7Z7G2 160 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 RASGEF1AQ8N9B8 481 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 DDHD1Q8NEL9 900 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 MSANTD3Q96H12 275 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 LENG8Q96PV6 779 aaPredicted RBP19.85■□□□□ 0.77
CLN3-250ENST00000636839 MBNL1Q9NR56 388 aaKnown RBP19.85■□□□□ 0.77
CLN3-250ENST00000636839 FBXL21Q9UKT6 434 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 PIKFYVEQ9Y2I7 2098 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 BIRC5O15392 142 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 PLRG1O43660 514 aaKnown RBP19.85■□□□□ 0.77
CLN3-250ENST00000636839 TM7SF2O76062 418 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 CTSCP53634 463 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 TSNAXIP1Q2TAA8 658 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 SIX5Q8N196 739 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 DTX3LQ8TDB6 740 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 ZNF473Q8WTR7 871 aaKnown RBP19.85■□□□□ 0.77
CLN3-250ENST00000636839 FAM131CQ96AQ9 280 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 LINGO1Q96FE5 620 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 MRPL57Q9BQC6 102 aaKnown RBP19.85■□□□□ 0.77
CLN3-250ENST00000636839 MRPL46Q9H2W6 279 aaKnown RBP19.85■□□□□ 0.77
CLN3-250ENST00000636839 EBF1Q9UH73 591 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 COMMD10Q9Y6G5 202 aa19.85■□□□□ 0.77
CLN3-250ENST00000636839 A0A1W2PQU0 124 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 NDUFAB1O14561 156 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 ITM2AO43736 263 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 LYPLA1O75608 230 aaPredicted RBP19.84■□□□□ 0.77
CLN3-250ENST00000636839 PCCBP05166 539 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 MYL2P10916 166 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 CCR7P32248 378 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 OVGP1Q12889 678 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 ACAP2Q15057 778 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 ACSBG2Q5FVE4 666 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 ZYG11AQ6WRX3 759 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms