RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 KLC4Q9NSK0 619 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 KCNK6Q9Y257 313 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 NEU2Q9Y3R4 380 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 CCDC78A2IDD5 438 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 CFAP99D6REC4 459 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 ZW10O43264 779 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 MAGEA6P43360 314 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 CACNG1Q06432 222 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 PERM1Q5SV97 790 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 TSTD2Q5T7W7 516 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 LRRC8BQ6P9F7 803 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 CCNI2Q6ZMN8 369 aaPredicted RBP20.42■□□□□ 0.86
CLN3-240ENST00000631023 TAS2R42Q7RTR8 314 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 C17orf82Q86X59 251 aaPredicted RBP20.42■□□□□ 0.86
CLN3-240ENST00000631023 ZNF547Q8IVP9 402 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 NAGSQ8N159 534 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 NXPE1Q8N323 547 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 RASGEF1AQ8N9B8 481 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 CCDC74AQ96AQ1 378 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 COPS8Q99627 209 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 CCDC3Q9BQI4 270 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 OSGEPL1Q9H4B0 414 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 FAM96AQ9H5X1 160 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 LRIT1Q9P2V4 623 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 PCYOX1Q9UHG3 505 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 TCAF1Q9Y4C2 921 aa20.42■□□□□ 0.86
CLN3-240ENST00000631023 DNMT3AQ9Y6K1 912 aaPredicted RBP20.42■□□□□ 0.86
CLN3-240ENST00000631023 CHD8Q9HCK8 2581 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 CA5AP35218 305 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 TERF1P54274 439 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 KCNJ11Q14654 390 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 TMEM220Q6QAJ8 160 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 SFTPA2Q8IWL1 248 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 ARL14Q8N4G2 192 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 SLCO2A1Q92959 643 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 CLCA2Q9UQC9 943 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 ACACBO00763 2458 aa20.41■□□□□ 0.86
CLN3-240ENST00000631023 OR5K4A6NMS3 321 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 RHPN2P1A8MT19 583 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 CCDC188H7C350 402 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 SNX2O60749 519 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 MT-CO3P00414 261 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 MAZP56270 477 aaKnown RBP20.4■□□□□ 0.86
CLN3-240ENST00000631023 KCTD19Q17RG1 926 aaPredicted RBP20.4■□□□□ 0.86
CLN3-240ENST00000631023 PLA2G4EQ3MJ16 856 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 AMZ2Q86W34 360 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.4■□□□□ 0.86
CLN3-240ENST00000631023 TBC1D29Q9UFV1 150 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 SLC23A2Q9UGH3 650 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 RNF215Q9Y6U7 377 aa20.4■□□□□ 0.86
CLN3-240ENST00000631023 TRBV5-4A0A0C4DH59 114 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 TCRBV7S3A2A0A539 114 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 FAM149AA5PLN7 773 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 OR2AG2A6NM03 316 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 FANCGO15287 622 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 F3P13726 295 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 PRAMEP78395 509 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 FNBP1LQ5T0N5 605 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 ARMC3Q5W041 872 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 IYDQ6PHW0 289 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 AVL9Q8NBF6 648 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 OR13J1Q8NGT2 312 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 PATE1Q8WXA2 126 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 CPT1BQ92523 772 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 HDAC10Q969S8 669 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 SGF29Q96ES7 293 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 TTC1Q99614 292 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 STN1Q9H668 368 aaKnown RBP20.39■□□□□ 0.85
CLN3-240ENST00000631023 ZDHHC3Q9NYG2 299 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 DNAJC16Q9Y2G8 782 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 KIF26BQ2KJY2 2108 aa20.39■□□□□ 0.85
CLN3-240ENST00000631023 CCDC162PA2VCL2 907 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 KLHL33A6NCF5 533 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 TCEA3O75764 348 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 POP7O75817 140 aaKnown RBP20.38■□□□□ 0.85
CLN3-240ENST00000631023 IDSP22304 550 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 ACRV1P26436 265 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 ARSDP51689 593 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 CTSCP53634 463 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 ACVR1Q04771 509 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 SYT10Q6XYQ8 523 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 SYDE1Q6ZW31 735 aaPredicted RBP20.38■□□□□ 0.85
CLN3-240ENST00000631023 DET1Q7L5Y6 550 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 C11orf96Q7Z7L8 435 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 SERPINA9Q86WD7 417 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 KLHL7Q8IXQ5 586 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 SFRP1Q8N474 314 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 DCBLD1Q8N8Z6 715 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 MCUQ8NE86 351 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 OR6P1Q8NGX9 317 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 DEPDC7Q96QD5 511 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 SYNDIG1Q9H7V2 258 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 XAB2Q9HCS7 855 aaKnown RBP20.38■□□□□ 0.85
CLN3-240ENST00000631023 CHRAC1Q9NRG0 131 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 ASIC3Q9UHC3 531 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 TRBV23OR9-2A0A075B6M9 112 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 KIR2DS5A0A0G2JLQ3 304 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 A0A0G2JNG1 304 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 KIR2DS3K7RE56 304 aa20.38■□□□□ 0.85
CLN3-240ENST00000631023 MLNP12872 115 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms