RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 SDR16C5Q8N3Y7 309 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 FBXO25Q8TCJ0 367 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 SETD7Q8WTS6 366 aaKnown RBP18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 ZNF514Q96K75 400 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 FAM129AQ9BZQ8 928 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 TMEM168Q9H0V1 697 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 UCKL1Q9NWZ5 548 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 CHMP2BQ9UQN3 213 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 LAMA1P25391 3075 aa18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 ZFC3H1O60293 1989 aaKnown RBP18.88■□□□□ 0.61
SQSTM1-216ENST00000626660 MED19A0JLT2 244 aaPredicted RBP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 E7ESA3 106 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 EIF3HO15372 352 aaKnown RBP eCLIP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 CD3EAPO15446 510 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 ANXA6P08133 673 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 PRSS56P0CW18 603 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 CD59P13987 128 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 THOC5Q13769 683 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 ITIH4Q14624 930 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 TCEA2Q15560 299 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 TRADDQ15628 312 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 DBN1Q16643 649 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 LONRF1Q17RB8 773 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 SPANXN3Q5MJ09 141 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 HP1BP3Q5SSJ5 553 aaPredicted RBP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 MRNIPQ6NTE8 343 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 CRTC3Q6UUV7 619 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 KANSL1Q7Z3B3 1105 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 TAF8Q7Z7C8 310 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 SDCCAG8Q86SQ7 713 aaPredicted RBP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 SLC25A45Q8N413 288 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 SCG3Q8WXD2 468 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 TRIM56Q9BRZ2 755 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 GSDMCQ9BYG8 508 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 CAAP1Q9H8G2 361 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 ZC3H7BQ9UGR2 993 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 PIKFYVEQ9Y2I7 2098 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 PRKAB1Q9Y478 270 aa18.87■□□□□ 0.61
SQSTM1-216ENST00000626660 ARHGEF17Q96PE2 2063 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 LMO7DNF2Z398 122 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 SLC30A4O14863 429 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 CHUKO15111 745 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 PFDN6O15212 129 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 KMOO15229 486 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 FFAR2O15552 330 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 PMLP29590 882 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 TTPAP49638 278 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 HLTFQ14527 1009 aaKnown RBP eCLIP18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 CRYMQ14894 314 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 ZDHHC24Q6UX98 284 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 MICALCLQ6ZW33 695 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 CHST15Q7LFX5 561 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 CCDC25Q86WR0 208 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 NAXDQ8IW45 347 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 RASGEF1AQ8N9B8 481 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 GABPB2Q8TAK5 448 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 RHBDD1Q8TEB9 315 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 IFT81Q8WYA0 676 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 CFAP36Q96G28 342 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 FCRL3Q96P31 734 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 DUSP23Q9BVJ7 150 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 PHACTR1Q9C0D0 580 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 CLPBQ9H078 707 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 SAYSD1Q9NPB0 183 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 C20orf96Q9NUD7 363 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 NLGN3Q9NZ94 848 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 MTRF1LQ9UGC7 380 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 TEX264Q9Y6I9 313 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 FAM169AQ9Y6X4 670 aa18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 CNOT1A5YKK6 2376 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-216ENST00000626660 IGLV3-16A0A075B6K0 115 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 ZCWPW2A0A1B0GU75 182 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 OR2AG2A6NM03 316 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 BHMG1C9JSJ3 638 aaPredicted RBP18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 F8W8V4 182 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 TPP1O14773 563 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 SH3BP5O60239 455 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 RHOXF2BP0C7M4 288 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 ACP5P13686 325 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 VCLP18206 1134 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 ARNTP27540 789 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 NSG1P42857 185 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 ARCN1P48444 511 aaKnown RBP18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 CTBSQ01459 385 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 CBLBQ13191 982 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 INSCQ1MX18 579 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 RSPO4Q2I0M5 234 aaPredicted RBP18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 DEFB133Q30KQ1 61 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 TEX35Q5T0J7 233 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 NEPROQ6NW34 567 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 LVRNQ6Q4G3 990 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 TMEM220Q6QAJ8 160 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 DBX2Q6ZNG2 339 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 CEP128Q6ZU80 1094 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 DET1Q7L5Y6 550 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 ANKMY2Q8IV38 441 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 IGDCC3Q8IVU1 814 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 IFT20Q8IY31 132 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 ZBED8Q8IZ13 594 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms