RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 TBC1D3EA0A087X179 549 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D3KA0A087X1G2 549 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D3FA6NER0 549 aaPredicted RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D3LB9A6J9 549 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 H0Y8X5 98 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 PRMT5O14744 637 aaPredicted RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 ECI2O75521 394 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 OLFM2O95897 454 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D3HP0C7X1 549 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 ZNF37AP17032 561 aaPredicted RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 MNAT1P51948 309 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 CASP9P55211 416 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 RUNX3Q13761 415 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 SETMARQ53H47 684 aaPredicted RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D3GQ6DHY5 549 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D3CQ6IPX1 549 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 SUSD1Q6UWL2 747 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 C6orf89Q6UWU4 347 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D3Q8IZP1 549 aaPredicted RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 KIRREL3Q8IZU9 778 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 NPAS2Q99743 824 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 DOCK4Q8N1I0 1966 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 IGLON5A6NGN9 336 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 UBFD1O14562 309 aaKnown RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 GIPC1O14908 333 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 CACNG3O60359 315 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 OR4F21O95013 312 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 ADH1CP00326 375 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 ALADP13716 330 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 PPP3CCP48454 512 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 IDH3AP50213 366 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 GALK1P51570 392 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 CLDN2P57739 230 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 IL2P60568 153 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 ERVK-21P61565 698 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 HMGCS1Q01581 520 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 RPS6KA2Q15349 733 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 LSM12Q3MHD2 195 aaKnown RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 THEMIS2Q5TEJ8 643 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 CHST15Q7LFX5 561 aaPredicted RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 CFAP206Q8IYR0 622 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 FAM160A2Q8N612 972 aaPredicted RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 TEX9Q8N6V9 391 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 PLA2G15Q8NCC3 412 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 DLG3Q92796 817 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 C3orf30Q96M34 536 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 BIRC8Q96P09 236 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 TRMT61BQ9BVS5 477 aaKnown RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 MKRN2Q9H000 416 aaKnown RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 FAM83DQ9H4H8 585 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 FARSBQ9NSD9 589 aaKnown RBP10.42□□□□□ -0.74
VPS11-208ENST00000621676 TSC2P49815 1807 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 FRMPD3Q5JV73 1810 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 AHCTF1Q8WYP5 2266 aa10.42□□□□□ -0.74
VPS11-208ENST00000621676 HMGCLP35914 325 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 SH3BP2P78314 561 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 PRSS36Q5K4E3 855 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 GPRC6AQ5T6X5 926 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 AFTPHQ6ULP2 937 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 KYAT3Q6YP21 454 aaKnown RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 GK5Q6ZS86 529 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 HMGB4Q8WW32 186 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 LPGAT1Q92604 370 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 IL17FQ96PD4 163 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 TTC1Q99614 292 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 COPS8Q99627 209 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 C1QTNF1Q9BXJ1 281 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 KLHL25Q9H0H3 589 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 NLE1Q9NVX2 485 aaPredicted RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 OXSMQ9NWU1 459 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 ARL15Q9NXU5 204 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 SIRPGQ9P1W8 387 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 MED16Q9Y2X0 877 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 STARD13Q9Y3M8 1113 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 SAP18O00422 153 aaKnown RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 RECQL5O94762 991 aaPredicted RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 DHRS4L1P0CG22 281 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 LEPRP48357 1165 aaKnown RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 INO80DQ53TQ3 878 aaPredicted RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 GRAMD4Q6IC98 578 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 CUZD1Q86UP6 607 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 GPSM1Q86YR5 675 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 PHOSPHO2Q8TCD6 241 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 OSCP1Q8WVF1 389 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 AARSD1Q9BTE6 412 aaKnown RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D10AQ9BXI6 508 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 TPSD1Q9BZJ3 242 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 NOL11Q9H8H0 719 aaKnown RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 TCF7L2Q9NQB0 619 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 TBC1D14Q9P2M4 693 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 IL36AQ9UHA7 158 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 IRAK3Q9Y616 596 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 WASF2Q9Y6W5 498 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 MAP3K7O43318 606 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 SYNCRIPO60506 623 aaKnown RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 IPO13O94829 963 aaKnown RBP10.41□□□□□ -0.74
VPS11-208ENST00000621676 LRATO95237 230 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 MPOP05164 745 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 SERPIND1P05546 499 aa10.41□□□□□ -0.74
VPS11-208ENST00000621676 T-ENOLP0DO92 83 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms