RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 KCNMB4Q86W47 210 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 CILP2Q8IUL8 1156 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 LMNTD2Q8IXW0 634 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 GSPT2Q8IYD1 628 aaKnown RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 PHACTR4Q8IZ21 702 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 PNPLA1Q8N8W4 532 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 HEXDCQ8WVB3 486 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 TSACCQ96A04 125 aaPredicted RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 FAM167BQ9BTA0 163 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 BOCQ9BWV1 1114 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 ZCCHC2Q9C0B9 1178 aaKnown RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 RMI1Q9H9A7 625 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 LRRC4CQ9HCJ2 640 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 MRPL40Q9NQ50 206 aaKnown RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 DNAJC28Q9NX36 388 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 MOCS1Q9NZB8 636 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 SUFUQ9UMX1 484 aa19.48■□□□□ 0.71
UPF3A-211ENST00000618700 PCYT1BQ9Y5K3 369 aaPredicted RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.48■□□□□ 0.71
UPF3A-211ENST00000618700 ADAMTS9Q9P2N4 1935 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 A0A1B0GTQ1 180 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 CHUKO15111 745 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 NUAK1O60285 661 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 DFNA5O60443 496 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 RASGRP1O95267 797 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 CER1O95813 267 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 FAM153BP0C7A2 387 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 SSTR1P30872 391 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 AKT1P31749 480 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 TTPAP49638 278 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 HK3P52790 923 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 PPARDQ03181 441 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 FAM153CQ494X1 144 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 HSP90AA5PQ58FG0 334 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 ZNF542PQ5EBM4 170 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 ZNF470Q6ECI4 717 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 CCNI2Q6ZMN8 369 aaPredicted RBP19.47■□□□□ 0.71
UPF3A-211ENST00000618700 PRR23CQ6ZRP0 262 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 LDB1Q86U70 411 aaPredicted RBP19.47■□□□□ 0.71
UPF3A-211ENST00000618700 CNTN4Q8IWV2 1026 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 CALML6Q8TD86 181 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 SCG3Q8WXD2 468 aaKnown RBP19.47■□□□□ 0.71
UPF3A-211ENST00000618700 CDC42EP4Q9H3Q1 356 aaKnown RBP19.47■□□□□ 0.71
UPF3A-211ENST00000618700 CAAP1Q9H8G2 361 aa19.47■□□□□ 0.71
UPF3A-211ENST00000618700 RIF1Q5UIP0 2472 aaKnown RBP19.47■□□□□ 0.71
UPF3A-211ENST00000618700 GVINP1Q7Z2Y8 2422 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 SGTAO43765 313 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 SPAG6O75602 509 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 CDK14O94921 469 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 C1QAP02745 245 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 ERVK-10P10266 1014 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 MSH3P20585 1137 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 THOC5Q13769 683 aaKnown RBP19.46■□□□□ 0.71
UPF3A-211ENST00000618700 SLMAPQ14BN4 828 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 PYCR3Q53H96 274 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 PRAMEF14Q5SWL7 426 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 ZNF449Q6P9G9 518 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 CYS1Q717R9 158 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 MARK2Q7KZI7 788 aaKnown RBP19.46■□□□□ 0.71
UPF3A-211ENST00000618700 PALM2Q8IXS6 379 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 RBFAQ8N0V3 343 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 MINDY1Q8N5J2 469 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 RASGEF1AQ8N9B8 481 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 OR2I1PQ8NGU4 316 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 TCF12Q99081 682 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 TTC1Q99614 292 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 TXLNGYQ9BZA5 131 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 TCEAL2Q9H3H9 227 aaPredicted RBP19.46■□□□□ 0.71
UPF3A-211ENST00000618700 GAREM1Q9H706 876 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 IL21RQ9HBE5 538 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 CYP4F12Q9HCS2 524 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 NINJ2Q9NZG7 142 aa19.46■□□□□ 0.71
UPF3A-211ENST00000618700 APOBEC3BQ9UH17 382 aaKnown RBP19.46■□□□□ 0.71
UPF3A-211ENST00000618700 TCRBV9S1A1TA0A576 114 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 CFAP99D6REC4 459 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 YKT6O15498 198 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 OR1I1O60431 355 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 FOXD2O60548 495 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 PIAS2O75928 621 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 RALBP11234 206 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 JUNDP17535 347 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 EPHA8P29322 1005 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 PPARGP37231 505 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 SLC1A2P43004 574 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 ARRB1P49407 418 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 BLKP51451 505 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 CTSCP53634 463 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 HNRNPKP61978 463 aaKnown RBP eCLIP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 MGAT5Q09328 741 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 GTF2H3Q13889 308 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 UBAP2Q5T6F2 1119 aaKnown RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 RNF187Q5TA31 235 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 CAPN12Q6ZSI9 719 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 SDCCAG8Q86SQ7 713 aaPredicted RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 HID1Q8IV36 788 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 ZNF547Q8IVP9 402 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 DENND6AQ8IWF6 608 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 OTUD6BQ8N6M0 293 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 DCUN1D1Q96GG9 259 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms